Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq62 107 2e-18 seq9 82.4 8e-11 >seq62 Length=286411 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 |||||||| | | || |||||||| || || | | |||||||| || ||||| ||| Sbjct 259967 CCTTCATCACGGGAGATTAATTCATTGGAGAATGCCAAACCAGGCATGAGACCACGTTTC 260026 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 ||||||||||| |||| |||||| |||||| |||||| || ||||| ||||| |||||| Sbjct 260027 TTCAACCAAAAAATGGAACAGAAAGAACCAGAGAAGAAAATACCTTCAACACAAGCAAAG 260086 Query 74889 GC 74890 || Sbjct 260087 GC 260088 >seq9 Length=695587 Score = 82.4 bits (90), Expect = 8e-11 Identities = 165/241 (68%), Gaps = 4/241 (2%) Strand=Plus/Minus Query 74769 CCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTC 74828 |||||||| | |||||||||||| || || || | |||||||| || ||||| ||| Sbjct 332885 CCTTCATCACGAGATATCAATTCATTAGAGAATGATAAACCAGGCATCAGACCACGTTTC 332826 Query 74829 TTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAG 74888 || ||||| || || | ||| || ||| |||||| || || || ||||| ||||| Sbjct 332825 TTTAACCAGAAAATTGAACAAAAACTTCCAGAGAAGAAAATTCCCTCCACACATGCAAAT 332766 Query 74889 GCGACAAGGCGTTGCGCGAACGGTGCATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCT 74948 || | | | || || ||| || ||| | ||||| || ||||| | ||| Sbjct 332765 GCCAACAATCTTTCAGCAAACAAATTCTCAGAATTAATCCATTTCAATGCCCAGTTAGC- 332707 Query 74949 TTTCGTTTG-ACCGCAGGGACAGTATCGATCGCTTGGA--AGAGGCTTGCCTTCTCTTCG 75005 |||| |||| || | || || ||||| || || || | ||| | || | ||||||| | Sbjct 332706 TTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAATAGACGATTTCTTTCTCTTTG 332647 Query 75006 G 75006 | Sbjct 332646 G 332646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547210637283200