Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq102 109 4e-19 >seq102 Length=34929 Score = 109 bits (120), Expect = 4e-19 Identities = 161/227 (71%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 126075 TCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATGAATGAATTCACCCACCTCA 126134 || |||||||| ||||| ||||| ||| || ||||||||||| || ||||| | Sbjct 32580 TCAATATGATTCTTATAAACATGTGTATCACCCAATGTATGAATAAAATCACCAGGTTTT 32521 Query 126135 AGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGA 126194 | ||| ||| ||| | | ||| | ||||||||| ||||||||| || ||| Sbjct 32520 AAATTACAAACTTGTGCCATTAATCTTGTTAATAAAGCATATGATGCAATATTAAATGGA 32461 Query 126195 ACACCTAAAAATATATCAGCACTTCTTTGATATAATTGACAATTTAAT---TTACCCTCT 126251 |||||||| |||||| ||||||||| | ||||||| ||||| ||| ||| Sbjct 32460 ACACCTAATCCCATATCACATGATCTTTGATACATTTGACAACTTAATTCATTAGTATCT 32401 Query 126252 ---TGTACGTAAAATTGAAACATTGTGTGGCAAGGTGGTAATGCCAT 126295 | ||| |||||||| ||||| || ||||||||||||||||| Sbjct 32400 GTATCTACCCAAAATTGACACATTAAATGACAAGGTGGTAATGCCAT 32354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408594495842288