Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq38 102 6e-17 seq10 96.9 2e-15 seq52 87.8 1e-12 seq84 82.4 5e-11 seq27 82.4 5e-11 >seq38 Length=381539 Score = 102 bits (112), Expect = 6e-17 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| | ||||| || ||| || | || |||||| || Sbjct 330467 ATGCAAATTTTCGTTAAAACATTAACTGGAAAGACTATCACTTTGGAAGTCGAATCCAAT 330526 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| ||||| || || ||||||||||| | || || | Sbjct 330527 GATACAATTGAAAAT--GTCAAGAGTAAGATTCAAGACAAAGAAGGAATCCCACCAGATC 330584 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||||| || |||||||| || ||||||||||| || | | | | |||||||||||| | Sbjct 330585 AACAACGTTTGATTTTTGCTGGTAAACAATTGGAAGATGGAAGAACCTTGTCCGATTATA 330644 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| || |||||||| ||||| ||| | ||| | || || Sbjct 330645 ACATTCAAAAGGAATCTACTTTGCACTTGGTGTTGAGATTGAGAGGTGG 330693 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| | ||||| ||| |||||| | || || ||| || Sbjct 330923 ATGCAAATTTTCGTTAAAACATTAACTGGTAAAACCATTACATTGGAAGTTGAATCCAAT 330982 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| ||||| ||| || || || |||||| | || || | Sbjct 330983 GATACAATTGAAAAT--GTCAAGTCAAAGATTCAAGATAAGGAAGGTATCCCACCAGATC 331040 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | | || ||||| || |||||| | || |||| | | | ||||| ||||||| Sbjct 331041 AACAAAGACTTATATTTGCTGGTAAACAACTAGAAGACGGAAGAACATTGTCTGATTACA 331100 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | ||||||||||| ||| | ||||| |||||| | ||| | || || Sbjct 331101 ATATCCAAAAAGAATCAACTCTTCATTTAGTTTTGAGATTGAGAGGTGG 331149 >seq10 Length=665159 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| || ||||| || ||||| ||| ||| || |||| || ||| | Sbjct 188399 ATGCAAATTTTCGTTAAAACACTCACTGGTAAAACTATCACTCTTGAAGTTGAATCAAAT 188340 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| ||||| ||||| ||||||||||| |||| || | Sbjct 188339 GATACTATTGAAAAT--GTCAAGTCTAAAATTCAAGACAAAGAAGGAATTCCACCAGATC 188282 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | || |||||||| || |||||||| || || | | | | ||| || ||||||| Sbjct 188281 AACAAAGATTGATTTTTGCTGGTAAACAATTAGAAGATGGAAGAACCTTATCTGATTACA 188222 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || ||||| || |||||||| || |||||| | ||| | || || Sbjct 188221 ATATTCAAAAGGAATCTACTTTGCACTTAGTTTTGAGATTGAGAGGTGG 188173 >seq52 Length=331721 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| |||||| | ||||| || ||| || | || || ||| | Sbjct 165531 ATGCAAATCTTTGTCAAAACTTTGACTGGTAAGACTATCACTTTGGAAGTTGAATCAAAT 165472 Query 27850 GACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCAG 27909 ||| | | || ||||| ||||| ||||| |||||| |||| || || Sbjct 165471 GACACTATTGAAAATGTCAAGTCTAAAATTCAAGACAAGGAAGGTATTCCACCAGATCAA 165412 Query 27910 CAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAAC 27969 ||| | | || ||||| || ||||||||||| || | | | | || || ||||| ||| Sbjct 165411 CAAAGACTTATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACATTATCTGATTATAAC 165352 Query 27970 ATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || |||||||| ||||||||||| |||||| Sbjct 165351 ATTCAAAAAGAATCAACTTTGCATTTAGTTTTG 165319 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||||||||| || ||||| | ||||| || |||||| | || || ||| | Sbjct 185239 AATGCAAATTTTCGTTAAAACATTAACTGGTAAGACAATTACATTGGAAGTTGAATCAAA 185298 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 |||| | | || |||||| ||| || ||||| |||||| | || || || Sbjct 185299 CGACACTATTGAAAATGTCAAATCAAAGATTCAAGACAAGGAAGGTATCCCACCAGATCA 185358 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAA 27968 ||| | | || ||||| || ||||||||||| || | | | | | || || || || Sbjct 185359 ACAAAGACTCATCTTTGCTGGTAAACAATTGGAAGATGGAAGAACTCTCTCAGACTATAA 185418 Query 27969 CATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||| ||||| || |||||||||||||||||| | ||| | || || Sbjct 185419 CATTCAAAAGGAATCAACTTTGCATTTGGTTTTGAGATTGAGAGGTGG 185466 >seq84 Length=160583 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||| ||||||| ||||| || ||||| || ||||||||||| | ||| | Sbjct 128965 AATGCAACTTTTTGTAAAAACCCTAACTGGAAAGACAATTACAATTGAAATGGAATCGAA 128906 Query 27849 CGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGCA 27908 || ||| || | |||||||| ||| || || || || |||| || || Sbjct 128905 TGATACTGTTGAACATTTGAAACAAAAGATATTTGATAAGGAGGGAATTCCATCAGATCA 128846 Query 27909 GCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACG--CAGCTTGTCCGATTAC 27966 ||||| || |||| ||| |||||||||||||| || | | | ||| | || |||||| Sbjct 128845 ACAACGATTGATTTATGCAGGAAAACAATTGGAAGATGGAAGAACAGTTAGT--GATTAC 128788 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 || | ||||| || ||| ||||||| || ||| Sbjct 128787 AATCTTCAAAAGGATTCAACTGTGCATTTAGTGTTG 128752 >seq27 Length=417575 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845 ||||||||||||||| || ||||| | ||||| ||| |||||| | || || ||| Sbjct 24163 TAAAATGCAAATTTTCGTTAAAACATTAACTGGTAAAACTATTACCTTGGAAGTTGAATC 24104 Query 27846 CACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGA 27905 || ||| | || || || ||||| || || |||||| |||| || Sbjct 24103 CAATGACACCATTGAAAACGTTAAGAGCAAAATTCAAGATAAGGAAGGTATTCCTCCAGA 24044 Query 27906 GCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTA 27965 || ||| | || ||||| || || ||||||||||| || | | | | |||||| ||||| Sbjct 24043 TCAACAAAGATTGATTTTCGCTGGTAAACAATTGGAAGATGGAAGAACCTTGTCTGATTA 23984 Query 27966 CAACATCCAAAAAGA 27980 ||| || ||||| || Sbjct 23983 CAATATTCAAAAGGA 23969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355858999734768