Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq9 181 9e-41 seq231 172 5e-38 seq62 136 3e-27 >seq9 Length=695587 Score = 181 bits (200), Expect = 9e-41 Identities = 395/581 (68%), Gaps = 9/581 (2%) Strand=Plus/Minus Query 4544 TAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGT 4603 |||||| || ||||| ||| || ||||| || | |||| ||| ||||| || | Sbjct 332910 TAAACATGCGAAATCTGTATGTAACCCTTCATCACGAGATATCAATTCATTAGAGAATGA 332851 Query 4604 TAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAA 4663 ||| || ||||| | ||| | || || | ||| || || | ||| ||||| || Sbjct 332850 TAAACCAGGCATCAGACCACGTTTCTTTAACCAGAAAATTGAACAAAAACTTCCAGAGAA 332791 Query 4664 GAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTC 4723 ||| || || || || ||||| || | |||| | ||| | | || | Sbjct 332790 GAAAATTCCCTCCACACATGCAAATGCCAACAATCTTTCAGCAAACAAATT--CTCAGAA 332733 Query 4724 TTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGC 4783 || ||||||||| ||||||||||||||||| || | ||| | || | ||| | || || Sbjct 332732 TT-AATCCATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGGC 332674 Query 4784 GTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 | ||||| | || |||| | |||||| ||| ||| || || || ||||| Sbjct 332673 ATGAAATAGACGATTTCTTTCTCTTTGGTCTTTAATCAGAGTTTCAATGAGAGTACTATA 332614 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 |||||||| ||| |||||||| || ||||| |||||||| || || ||||| ||||||| Sbjct 332613 CATTTCAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGG 332554 Query 4904 TACTTGAACTTCGTTACA-AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGG 4962 ||||||||||| || || ||| || || ||||| || || || || ||||||| Sbjct 332553 TACTTGAACTT-GTGCCATGAATTGTTGACATAGATTTTCATTGACAATTCCATCACTGG 332495 Query 4963 CTGCAAAAAACGCCAAAACATGAGAT-ATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTC 5021 ||||||| || |||| || || | || || | ||||| | || || ||||||| | Sbjct 332494 CTGCAAAGAAGGCCAGCAC-TGTCTTGATGAAATGTTGTTCATTAGAATTGAGTTTTTCC 332436 Query 5022 CAGTGGGGCAAATCTTTAGTTAA-ATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGC 5080 || | | | ||| | || || |||||| || || || ||||| || || || | Sbjct 332435 CATTCAGTTATATCAGT-GTGAAGATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGT 332377 Query 5081 TTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAA 5121 ||||||||||| ||| || | |||||| |||| |||| Sbjct 332376 CTTTTTGTACATTTCCCACATTTTAGGATAATGAAGTGGAA 332336 >seq231 Length=8293 Score = 172 bits (190), Expect = 5e-38 Identities = 283/400 (71%), Gaps = 6/400 (2%) Strand=Plus/Minus Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 ||||||||||| ||||||||||||||||| || | ||| | || | ||| | || || Sbjct 1303 TTAATCCATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGGCA 1244 Query 4785 TTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844 | ||||| | || |||| | |||||| ||| ||| || || || |||||| Sbjct 1243 TGAAATAGACGATTTCTTTCTCTTTGGTCTTTAATCAGAGTTTCAATGAGAGTACTATAC 1184 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTT 4904 ||||||| ||| |||||||| || ||||| |||||||| || || ||||| ||||||| | Sbjct 1183 ATTTCAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGT 1124 Query 4905 ACTTGAACTTCGTTACA-AAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 |||||||||| || || ||| || || ||||| || || || || |||||||| Sbjct 1123 ACTTGAACTT-GTGCCATGAATTGTTGACATAGATTTTCATTGACAATTCCATCACTGGC 1065 Query 4964 TGCAAAAAACGCCAAAACATGAGAT-ATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCC 5022 ||||| || |||| || || | || || | ||||| | || || ||||||| || Sbjct 1064 CGCAAAGAAGGCCAGCAC-TGTCTTGATGAAATGTTGTTCATTAGAGTTGAGTTTTTCCC 1006 Query 5023 AGTGGGGCAAATCTTTAGTTAA-ATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCT 5081 | | | | ||| | || || |||||| || || || ||||| || || || | Sbjct 1005 ATTCAGTTATATCAGT-GTGAAGATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGTC 947 Query 5082 TTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAA 5121 ||||||||||| ||| || | |||||| |||| |||| Sbjct 946 TTTTTGTACATTTCCCACATTTTAGGATAATGAAGTGGAA 907 >seq62 Length=286411 Score = 136 bits (150), Expect = 3e-27 Identities = 389/592 (66%), Gaps = 7/592 (1%) Strand=Plus/Plus Query 4542 AATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAAC 4601 |||||||| ||||||||| || || ||||| || | | || | ||| || || || Sbjct 259940 AATAAACAGGCAAAATCAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAAT 259999 Query 4602 GTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAA 4661 | || || ||||| | ||| | || || | |||||| || | || || ||||| Sbjct 260000 GCCAAACCAGGCATGAGACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAG 260059 Query 4662 AAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTG 4721 ||||| || ||||| || ||||| || | ||| || | || | | | || Sbjct 260060 AAGAAAATACCTTCAACACAAGCAAAGGCCAATAAACGTTCGGCAAATAAATTCTCATTA 260119 Query 4722 TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATA 4781 | | |||||||| | ||||| || || || | || | |||| || | || Sbjct 260120 T---TGATCCATTTCATAGCCCAACGTGCCTTCTTTTGTACAGATGGAACAGTATCAATG 260176 Query 4782 GCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTA 4841 || || || || | | |||| | | || | || |||| || || ||| ||| Sbjct 260177 GCATTGAACAAACGATGTCTTTCTCTTTGATCCTTTATCAAAGTTTCAATGAGTGTACTA 260236 Query 4842 TACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCT 4901 |||||||||| ||| |||||||| |||||||| || || ||||| || ||||| |||||| Sbjct 260237 TACATTTCAGCATGGATATTTTCAATAGCAATTTGGAAACCGTAGAAACATCTCGCTTCT 260296 Query 4902 GTTACTTGAACTTC-GTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACT 4960 | || ||| || || | | ||| | || || || ||||| || || |||||||| Sbjct 260297 GGTATTTGTACCTCAGCCATAAATTGTTGGCAC-AAATTTTCATTGACAATACCGTCGGA 260355 Query 4961 GGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTT 5020 || ||||| || || |||||| ||||||| ||||||| || | | | | Sbjct 260356 CGCAGCAAAGAAAGCTAAAACACTCTTGATAAAGTGTTGTTCGTTTGGTGTCAAGGTGGT 260415 Query 5021 CCAGTGGGGCAAATCTTTAGTTAA-ATCAACTTCTTCAACAGTCCAAAACGACGCTTCCG 5079 ||| || | | ||| | || || ||||||||||||| ||||||| || || || | Sbjct 260416 CCATTGTGTAATATCAGT-GTGAAGATCAACTTCTTCAGCAGTCCAGAAGGATGCCATGG 260474 Query 5080 CTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 | || || ||||| |||||| | ||||| | | || | || |||||| Sbjct 260475 CCTTCTTATACATTTCCCAAATCTTTGGATATTCGAGAGGGAATAAGACAAA 260526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427045519541072