Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq38 300 2e-76 seq9 206 4e-48 seq62 201 2e-46 seq231 163 4e-35 >seq38 Length=381539 Score = 300 bits (332), Expect = 2e-76 Identities = 1034/1601 (65%), Gaps = 46/1601 (3%) Strand=Plus/Minus Query 76976 AATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAGGT-TTG--TATTTTG 77032 ||||||||||| ||| ||| | | || || |||||||| || | ||| ||||||| Sbjct 296652 AATTTCCCAAACAGTCTTGTACAATTCCTTAATATCATCAGGGATACCTTGGATATTTTG 296593 Query 77033 AATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTC 77092 |||||||| | || |||||| || ||| |||||||| | ||| Sbjct 296592 GATGGAACCTCTATTACCAATAATTTGGTTAACAATAGTTGGATTCCACATGTCAATCTT 296533 Query 77093 TGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACG 77152 | ||| | || ||||| |||| | | || |||| ||| ||| || | | Sbjct 296532 GATCAAATCAGCAACAAGATGTCTGTTAATGACTGGATATTCACCACTCAAAACACGTCT 296473 Query 77153 AGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGT 77212 ||| |||| || ||||||||||| | | |||||||||| ||||| |||||| || Sbjct 296472 AGTATAAACGTTTGATGTATATGGTTCGAAACATTCATTGTTGCCCAAGATTTGACTGGT 296413 Query 77213 AGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTT 77272 |||||||||||||| ||||| || || | ||| ||||||| ||| ||| || || Sbjct 296412 GGAAGCAGTTGGCATTGGTGCAACTAAGAGACTGTTTCTGACACCGTGTTGCAAGACTTG 296353 Query 77273 ATCTTTTAGATATTTCCAATCCCA------------AAGA-TCT-------GAA-GGTAC 77311 | | | | | || ||||||||| || | ||| ||| ||| | Sbjct 296352 TTGTCTCAAACCTTCCCAATCCCATCTACCGCTGGTAATAGTCTTACCTTCGAATGGTTC 296293 Query 77312 AACATC------CCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGA--TCCATTA 77363 | | || ||| | |||| ||| | || || ||||| || || ||| | | Sbjct 296292 ACCTTCTCTGGTCCAGAATTCGTGTTGGAAGATACCCTTACTG--ATTGGACTTCCTTCA 296235 Query 77364 TATGTTTCATAAGGTCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATG-CTCCGTA 77422 || |||||||| | |||||| | ||| ||||| || || ||| | | | Sbjct 296234 TAGGTTTCATATGTTCCTTCAACCTTAGCAAGTTC-CATTGAGCAGGTCATGGCAGCAAA 296176 Query 77423 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATA 77482 ||||| ||||| || || | | | ||||| | || ||||| ||| || || ||| Sbjct 296175 GTAAATGGTTTCAAAGATTTCCCTGTTGAGGTTTTTAGCTTCTTCACTTTCGAATGGAAG 296116 Query 77483 ATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCT 77542 | | | || || ||||| || || || ||||| || | |||||| ||||| ||||| Sbjct 296115 ACGCATCTTGATGAAAGCATCGGCCAAACCTTGAACACCGAGACCAATTGGTCTGTGTCT 296056 Query 77543 CTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAG 77602 || | || |||||| | || |||||||| | || ||||| ||||| | Sbjct 296055 AAAGTTACTCTTCTTGGCTTCTTCGACTGGGTAATAATTCTTATCAATAATCTTATTCAA 295996 Query 77603 ATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCA----- 77657 ||| | | | || || || || | || || | |||| | || | Sbjct 295995 ATTGTAAGTGGCAATCTTGACAACTTCGTATAACTTTTGGTGATCATAGGTTTGAGTTTC 295936 Query 77658 -TCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGC 77716 || | ||| || | | ||| ||| || || ||||| || || || |||| || Sbjct 295935 TTCATTGACATACTTTGGAAGAGCAATACTGGCAAGGTTACATACAGCAACTTCATCAGG 295876 Query 77717 GTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTG 77776 | | ||| || || || ||||| | ||| | | ||||| || || || ||||| Sbjct 295875 AGCAGTAAATTCAATAATTTCAGTACACAAGTTAGAAGACTTGATGGTACCAAGGTTTTG 295816 Query 77777 TTGGTTGCTCTTTTTATTGCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAAT 77836 ||| ||| ||| |||| || || ||||| || | || | || || |||||||| Sbjct 295815 TTGATTGGATTTTCTATTACAAGAATCCTTGTACAACATGTATGGGACACCAGTTTCAAT 295756 Query 77837 CTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTTTATCATAGATTTGTA-TCGCC 77895 || | ||| ||||||| ||||| || ||| || || | ||| | || Sbjct 295755 TTGGGCTTCAATAATAGCAAACCAGAGTTCTTGAGCCTTGATGGTTCTCTTGGCCTTTCC 295696 Query 77896 TCTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATC 77955 | ||||||||||||| ||||||| | | ||||| || |||||||||||| | | | Sbjct 295695 T-TCTCTTTCATATTTGGTATATAATTGATTGAATTCTTCACCCCAAACATCAGCAAGAC 295637 Query 77956 CAGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAA 78015 | | ||||||||| || | | |||||| || |||| |||||||| |||| ||| | Sbjct 295636 CTTGAGCTTCATTTGGACAGAAGAGTGACCATTCGGCATCATCCTTAACACGTTGCATGA 295577 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTG 78075 ||||||| | ||||| | | | |||| ||||| | ||| |||||| || || Sbjct 295576 AGAGATCGTTGACCCATAAACCCAAGAATAAATCTCTAGCTCTGATTTCTTCCTTACCGT 295517 Query 78076 TATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTG 78135 ||||||| | | ||| | ||| || | ||| ||||| ||||| ||||| | ||| || | Sbjct 295516 GATTCTTTCTCAAATCCAAAAAGTCAAAAATGTCAGAGTGCCAAGGTTCCAAATAAATGG 295457 Query 78136 CCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAA 78195 | | | || || ||| ||| || ||||| | ||||||||| |||| ||| ||| Sbjct 295456 CAAAGGCACCCTTTCTCTTACCACCACCTTGATCGACATATCTGGCAGTGTCATTGAAAA 295397 Query 78196 CTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCAC 78255 |||||||||||||||| | ||| || |||||||| ||||| || ||| || |||| Sbjct 295396 CTCTCAACATTGGAATTAAACCATTTGATGTTCCGTTTGTACCTCTAATGTATGATCCAG 295337 Query 78256 TTGCGCGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGC 78315 || | |||||| || || | || || || || || ||| || || || || | Sbjct 295336 AAGCTCTAATATTGTGAACTGACAAACCAATACCACCAGCAGACTTGGAAATAAGGGCAC 295277 Query 78316 AACGTTTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAAC 78375 || || | ||||| || ||||| | || |||||| |||| || || |||| Sbjct 295276 AAGTCTTAAGGGTATCATAAATACCATGAATGGAATCATCCTTCATAGAAACGAGGAAAC 295217 Query 78376 AGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAA 78435 | | |||||| || ||| || ||||| || ||||| ||||| ||||| ||| Sbjct 295216 AAGAACTCATTTGTGGAATTGGAGTACCAGCATTGAACAATGTTGGAGAGGCATGAATAA 295157 Query 78436 ACCATTTTTC-AGAAAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGA 78494 | ||| | | |||| || || |||| ||| ||| ||| ||||| | | || Sbjct 295156 A-CATACCACTACTGAGTAAATCATAGGTTTGAATGGCTCTTTCAATGTCACCTCCGTGG 295098 Query 78495 ATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTC 78535 || |||| ||||||||| ||||| || || |||||||| Sbjct 295097 ATACCTAAACTTACACGCATAAACATGTGTTGTGGTCTTTC 295057 >seq9 Length=695587 Score = 206 bits (228), Expect = 4e-48 Identities = 594/896 (66%), Gaps = 27/896 (3%) Strand=Plus/Minus Query 47855 ATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCCAT 47914 |||||| || || ||||| ||||| || || || || | ||||| | | ||| Sbjct 333195 ATATTCTCCAACTTTCTTCTCAAAAAAGTTTGTCTTTCCACTGACAGATATGATATTCAT 333136 Query 47915 AAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAG--- 47971 |||| |||||||| || |||||||| |||| | |||| ||| |||| || Sbjct 333135 CCAATCGAATGGATTTGATGAGTTATAAATCTTTTCATATCC-AATA--GAAACCAACAA 333079 Query 47972 TCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTT 48031 |||||| ||||| | ||| |||||| || ||| | | || ||||||||| || | | Sbjct 333078 TCTATCAGCAACCATTTCAATATATTGTTGCATTAATCTACTATTCATTCCAATCAAATC 333019 Query 48032 AACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGA 48091 |||||||| | || | | ||| || | || || ||||| || | | || Sbjct 333018 AACTGGTAAACTTTCACTGATAAATTCCTTCTCAATCTCAACAGCTTCATAAACAAGTGA 332959 Query 48092 -TGT--TACCGTTTCC--TCACTTGGTGGATACAACAAATGTTTAA-ACATTAAACATGC 48145 || ||| || | | || ||| || | |||| || | | ||||||||| Sbjct 332958 ATGAACTACTTGTTGAGGTAATTTAGTGTATTTCA---ATGTGGAATAGAGTAAACATGC 332902 Query 48146 AAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGG 48205 ||||| ||| | |||||||| | | || ||||| ||||| |||| | ||| || Sbjct 332901 GAAATCTGTATGTAACCCTTCATCACGAGATATCAATTCATTAGAGAATGATAAACCAGG 332842 Query 48206 CATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCC 48265 ||| || |||||||| || | ||| || |||| ||| |||||| ||||| || || Sbjct 332841 CATCAGACCACGTTTCTTTAACCAGAAAATTGAACAAAAACTTCCAGAGAAGAAAATTCC 332782 Query 48266 TTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT--ATCCAC 48323 || || |||||||| || ||| || | || ||| | | ||||| Sbjct 332781 CTCCACACATGCAAATGCC--AACAATCTTTCAGCAAACAAATTCTCAGAATTAATCCAT 332724 Query 48324 CGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 48383 |||||| | ||| ||||| | || | || | ||| || || |||| ||| ||| Sbjct 332723 TTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAATAGA 332664 Query 48384 AAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAG 48443 ||| |||| | ||||||| ||| || || | | |||||||||||| | Sbjct 332663 CGATTTCTTTCTCTTTGGTCTTTAATCAGAGTTTCAATGAGAGTACTATACATTTCAGCA 332604 Query 48444 TGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACC 48503 |||||||||||||| || || |||||||| || |||||||| ||||||| | || || Sbjct 332603 TGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACTTGAACT 332544 Query 48504 TCCGTACAA--AATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAA 48561 | || | | ||| ||| | | ||| ||||| || ||||||||||| || ||||| | Sbjct 332543 T--GTGCCATGAATTGTTGACATAGATTTTCATTGACAATTCCATCACTGGCTGCAAAGA 332486 Query 48562 ATGCTAATACATGT-TTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTG 48620 | || | || ||| || || |||| || ||| || ||| | ||||| | ||| ||| | Sbjct 332485 AGGCCAGCAC-TGTCTTGATGAAATGTTGTTCATTAGAATTGAGTTTTTCCCATTCAGTT 332427 Query 48621 ATATC-TTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATA 48679 ||||| | ||| | ||| || || || ||||||| ||||| ||| || ||||| || Sbjct 332426 ATATCAGTGTGA-AGATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTTTTTGTA 332368 Query 48680 CATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 ||| | ||| || | | || || | ||| || | |||||| | || ||||||| Sbjct 332367 CATTTCCCACATTTTAGGATAATGAAGTGGAAAGAGAACAAAACGATGAGGATTTT 332312 >seq62 Length=286411 Score = 201 bits (222), Expect = 2e-46 Identities = 412/604 (68%), Gaps = 10/604 (2%) Strand=Plus/Plus Query 48137 TAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 48196 |||||| ||||||||| || | |||||||| | |||||||| || || |||| Sbjct 259942 TAAACAGGCAAAATCAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAATGC 260001 Query 48197 GAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAA 48256 | ||| ||||| || |||||||| || | |||||| || | |||||| ||||| || Sbjct 260002 CAAACCAGGCATGAGACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAGAA 260061 Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCG--TTG 48314 ||| || ||||| || ||||| || || | || | || | ||| || Sbjct 260062 GAAAATACCTTCAACACAAGCAAAGGCC--AATAAACGTTCGGCAAATAAATTCTCATTA 260119 Query 48315 TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 48374 | ||||| |||||| |||||||| | |||| | || | || || || ||| Sbjct 260120 TTGATCCATTTCATAGCCCAACGTGCCTTCTTTTGTACAGATGGAACAGTATCAATGGCA 260179 Query 48375 TTAAAGAGA--AAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTAT 48432 || || | | | || ||| || ||| | ||||| | |||| || || | ||||| Sbjct 260180 TTGAACAAACGATGTCTTTCTCTTTGATC-CTTTATCA-AAGTTTCAATGAGTGTACTAT 260237 Query 48433 ACATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG 48492 ||||||| | || ||||||||||| || || || || ||||| |||||||||||||||| Sbjct 260238 ACATTTCAGCATGGATATTTTCAATAGCAATTTGGAAACCGTAGAAACATCTCGCTTCTG 260297 Query 48493 TGATCTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAG 48552 || |||||||| | |||| ||| |||||| ||||| || || || || | Sbjct 260298 GTATTTGTACCTCAGCCATAAATTGTTGGCACAAATTTTCATTGACAATACCGTCGGACG 260357 Query 48553 CAGCAAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCC 48612 ||||||| || ||||| ||| || ||||| | || |||||| | |||| | ||| Sbjct 260358 CAGCAAAGAAAGCTAAAACACTCTTGATAAAGTGTTGTTCGTTTGGTGTCAAGGTGGTCC 260417 Query 48613 AGTCATTGATATC-TTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCT 48671 | | | ||||| | ||| | ||| ||||||||||| ||||| || |||||| || Sbjct 260418 ATTGTGTAATATCAGTGTGA-AGATCAACTTCTTCAGCAGTCCAGAAGGATGCCATGGCC 260476 Query 48672 TTTTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGA 48731 || |||||||| | ||| || | |||| || ||||| | ||||| | | |||| Sbjct 260477 TTCTTATACATTTCCCAAATCTTTGGATATTCGAGAGGGAATAAGACAAAACGGTGTGGA 260536 Query 48732 TTTT 48735 |||| Sbjct 260537 TTTT 260540 >seq231 Length=8293 Score = 163 bits (180), Expect = 4e-35 Identities = 287/411 (70%), Gaps = 8/411 (2%) Strand=Plus/Minus Query 48329 TGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGtt 48388 |||||| | ||| ||||| | || | || | ||| || || |||| ||| ||| || Sbjct 1289 TGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAATAGACGATT 1230 Query 48389 tttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAAT 48448 | |||| | ||||||| ||| || || | | |||||||||||| | ||||| Sbjct 1229 TCTTTCTCTTTGGTCTTTAATCAGAGTTTCAATGAGAGTACTATACATTTCAGCATGAAT 1170 Query 48449 ATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGT 48508 ||||||||| || || |||||||| || |||||||| ||||||| | || || | || Sbjct 1169 ATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACTTGAACTT--GT 1112 Query 48509 ACAA--AATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCT 48566 | | ||| ||| | | ||| ||||| || ||||||||||| || ||||| || || Sbjct 1111 GCCATGAATTGTTGACATAGATTTTCATTGACAATTCCATCACTGGCCGCAAAGAAGGCC 1052 Query 48567 AATACATGT-TTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATC 48625 | || ||| || || |||| || ||| || || | ||||| | ||| ||| | ||||| Sbjct 1051 AGCAC-TGTCTTGATGAAATGTTGTTCATTAGAGTTGAGTTTTTCCCATTCAGTTATATC 993 Query 48626 -TTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATAT 48684 | ||| | ||| || || || ||||||| ||||| ||| || ||||| ||||| | Sbjct 992 AGTGTGA-AGATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTTTTTGTACATTT 934 Query 48685 TCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTT 48735 ||| || | | || || | ||| || | |||||| | || ||||||| Sbjct 933 CCCACATTTTAGGATAATGAAGTGGAAAGAGAACAAAACGATGAGGATTTT 883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694661992245760