Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq38 324 2e-83 seq9 219 6e-52 seq62 192 8e-44 seq231 174 2e-38 >seq38 Length=381539 Score = 324 bits (358), Expect = 2e-83 Identities = 1213/1887 (64%), Gaps = 65/1887 (3%) Strand=Plus/Minus Query 75377 GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 75436 ||||| || |||| | || ||||||| || | | ||||||||||||||| || | Sbjct 296846 GTGAATTGGATGGCATCGGCGGCTGGTTGAGTTCTCAAATAGTACATACCAGTCTTCAAC 296787 Query 75437 CCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCT--A 75494 ||| | ||| | || || ||||| | | |||||| ||| ||| | | | Sbjct 296786 CCCTTAGACCAAGCATAAAAGTGCATAGAACTCATCTTGGAA--ACT--GATGGAATTGA 296731 Query 75495 TATGAATA--TTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTT 75552 ||||| | |||| || ||| |||||| ||||| | ||| ||| || | | Sbjct 296730 AATGAAAACGTTCAAAGATTGAGATTGATCAATGAATGGAGATCTTTCAATGGCAAGATC 296671 Query 75553 TATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGG 75612 | | | | |||| ||||||||||| ||| ||| | | || || |||||||| || Sbjct 296670 CAACAAGCTTCTTTGCTTAATTTCCCAAACAGTCTTGTACAATTCCTTAATATCATCAGG 296611 Query 75613 AAGAT-TTG--TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCATC 75669 | | ||| ||||||| ||||| || | || | |||||| || || Sbjct 296610 GATACCTTGGATATTTTGGATGGAACCTCTATTACCAATAATTTGGTTAACAATAGTTGG 296551 Query 75670 ATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAATTC 75729 |||||||| | ||| | | ||| | || ||||| |||| | | || |||| Sbjct 296550 ATTCCACATGTCAATCTTGATCAAATCAGCAACAAGATGTCTGTTAATGACTGGATATTC 296491 Query 75730 TCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTT 75789 ||| ||| || | || ||| |||| || ||||||||||| | | |||||||||| Sbjct 296490 ACCACTCAAAACACGTCTAGTATAAACGTTTGATGTATATGGTTCGAAACATTCATTGTT 296431 Query 75790 TCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAG 75849 ||||| |||||| || |||||||| ||||| ||||| || || | ||| ||||||| Sbjct 296430 GCCCAAGATTTGACTGGTGGAAGCAGTTGGCATTGGTGCAACTAAGAGACTGTTTCTGAC 296371 Query 75850 ACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCA------------AAGA-- 75895 ||| ||| || || | | | | | || ||||||||| || | Sbjct 296370 ACCGTGTTGCAAGACTTGTTGTCTCAAACCTTCCCAATCCCATCTACCGCTGGTAATAGT 296311 Query 75896 -------TCTGATGGTACAACATC------CCAGAGATCGTATTGTAGAATTCCGTTGCT 75942 || ||||| || | || ||||| |||| ||| | || || || || Sbjct 296310 CTTACCTTCGAATGGTTCACCTTCTCTGGTCCAGAATTCGTGTTGGAAGATACCCTTACT 296251 Query 75943 AGCATATGA--TCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTC 76000 || || ||| | ||| ||||| || || || || | ||| ||||| || Sbjct 296250 G--ATTGGACTTCCTTCATAGGTTTCATATGTTCCTTCAACCTTAGCAAGTTC-CATTGA 296194 Query 76001 GCCTCTAACG-CACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATCTTGCGCTTC 76059 || | | | || | | ||||| ||||| || || | | | || || | || ||||| Sbjct 296193 GCAGGTCATGGCAGCAAAGTAAATGGTTTCAAAGATTTCCCTGTTGAGGTTTTTAGCTTC 296134 Query 76060 AAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAAT 76119 ||| || || ||| | | | || || ||||| || | || ||||| || | Sbjct 296133 TTCACTTTCGAATGGAAGACGCATCTTGATGAAAGCATCGGCCAAACCTTGAACACCGAG 296074 Query 76120 ACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAAT 76179 |||||| ||||| ||||| || | | |||||| | ||||||||||| | Sbjct 296073 ACCAATTGGTCTGTGTCTAAAGTTACTCTTCTTGGCTTCTTCGACTGGGTAATAATTCTT 296014 Query 76180 ATCTATAATTTTATTGAGATTTC---TGACAACTACTTTAACCACGTCCTTTAGTTTGAG 76236 ||| ||||| ||||| | ||| || ||| || || || || | || || | Sbjct 296013 ATCAATAATCTTATTCAAATTGTAAGTGGCAATC---TTGACAACTTCGTATAACTTTTG 295957 Query 76237 AAAATCAAA---TT---TTCCATCTATCACAAACATATTAAGAGCTATAGATGCTAGATT 76290 |||| | || || | || | ||| || | |||||| ||| || || || Sbjct 295956 GTGATCATAGGTTTGAGTTTCTTCATTGACATACTTTGGAAGAGCAATACTGGCAAGGTT 295897 Query 76291 ACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACTACA 76350 ||| || || || |||| || | | | ||| || || || || || | ||| | | Sbjct 295896 ACATACAGCAACTTCATCAGGAGCAGTAAATTCAATAATTTCAGTACACAAGTTAGAAGA 295837 Query 76351 CTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAAC 76410 |||||| || ||||| |||||||| ||| ||| | ||||| || ||||| || | | Sbjct 295836 CTTGATGGTACCAAGGTTTTGTTGATTGGATTTTCTATTACAAGAATCCTTGTACAACAT 295777 Query 76411 AAACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTTT 76470 | || ||||||||||| || | ||| ||||||| ||||| || ||| || Sbjct 295776 GTATGGGACACCAGTTTCAATTTGGGCTTCAATAATAGCAAACCAGAGTTCTTGAGCCTT 295717 Query 76471 TATTATAGATTTGTATCGCTTC--TCTCTTTCATATTGTGTATATAACCGTTCAAATTCA 76528 || | ||| | ||| ||||||||||||| |||||||| | | ||||| Sbjct 295716 GATGGTTCTCTTG--GCCTTTCCTTCTCTTTCATATTTGGTATATAATTGATTGAATTCT 295659 Query 76529 TCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTCACCA 76588 || |||||||||||| | | ||| || |||||| ||||| | | |||||| || || Sbjct 295658 TCACCCCAAACATCAGCAAGACCTTGAGCTTCATTTGGACAGAAGAGTGACCATTCGGCA 295599 Query 76589 TCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGG 76648 || |||||||| |||| ||| |||||||| | ||||| | | | |||| ||||| Sbjct 295598 TCATCCTTAACACGTTGCATGAAGAGATCGTTGACCCATAAACCCAAGAATAAATCTCTA 295539 Query 76649 GTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAA 76708 | ||| |||||| || || ||||||| | | ||| | || || | ||| ||||| Sbjct 295538 GCTCTGATTTCTTCCTTACCGTGATTCTTTCTCAAATCCAAAAAGTCAAAAATGTCAGAG 295479 Query 76709 TGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATA 76768 ||||| ||||| | ||| || || | ||||| || ||| ||| || ||||| | | Sbjct 295478 TGCCAAGGTTCCAAATAAATGGCAAAGGCACCCTTTCTCTTACCACCACCTTGATCGACA 295419 Query 76769 TATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTT 76828 ||||||||||||| ||| ||||||||||||||||||| | || || ||||| || ||| Sbjct 295418 TATCTGGCAGTGTCATTGAAAACTCTCAACATTGGAATTAAACCATTTGATGTTCCGTTT 295359 Query 76829 GTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTCCTCCT 76888 || || ||| || |||| | || | |||||| || || | || || || || Sbjct 295358 GTACCTCTAATGTATGATCCAGAAGCTCTAATATTGTGAACTGACAAACCAATACCACCA 295299 Query 76889 GCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCA 76948 || || || || || ||||| || | || ||||| || || | || |||| Sbjct 295298 GCAGACTTGGAAATAAGGGCACAAGTCTTAAGGGTATCATAAATACCATGAATGGAATCA 295239 Query 76949 TCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAAC 77008 ||| |||| || || ||||| | |||||| || ||| || ||||| ||| Sbjct 295238 TCCTTCATAGAAACGAGGAAACAAGAACTCATTTGTGGAATTGGAGTACCAGCATTGAAC 295179 Query 77009 AATGTAGGAGATGCATGAGTGAACCATTTTTC-AGAAAGTAGATTGTATGTTTCAATAAC 77067 ||||| ||||| |||||| | || ||| | | |||| || || |||| ||| | Sbjct 295178 AATGTTGGAGAGGCATGAAT-AAACATACCACTACTGAGTAAATCATAGGTTTGAATGGC 295120 Query 77068 TGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCG 77127 | ||| || || | | || || |||| | |||||||| ||||| || || |||| Sbjct 295119 TCTTTCAATGTCACCTCCGTGGATACCTAAACTTACACGCATAAACATGTGTTGTGGTCT 295060 Query 77128 TTCTACAGTCTTATTAT---TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACC 77184 ||| || | | ||| | ||| | |||||| | |||| | ||| || | || Sbjct 295059 TTCGGCAATACGACTATCGGCAAGTTTGAGCAAGTAGCTTCTTTCGAGAGTCTTGTATCC 295000 Query 77185 AAAATAGTTGTATGAAAAGTCTCTTTC 77211 ||| || | | || || |||||||| Sbjct 294999 AAAGTAATCGAATTGGAAATCTCTTTC 294973 >seq9 Length=695587 Score = 219 bits (242), Expect = 6e-52 Identities = 419/605 (69%), Gaps = 12/605 (2%) Strand=Plus/Minus Query 46626 TAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 46685 ||||||||| ||||| ||| | |||||||| | | || ||||| ||||| |||| Sbjct 332910 TAAACATGCGAAATCTGTATGTAACCCTTCATCACGAGATATCAATTCATTAGAGAATGA 332851 Query 46686 GAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAA 46745 | |||||||| || ||||| || || | ||| || || | ||| |||||| || Sbjct 332850 TAAACCAGGCATCAGACCACGTTTCTTTAACCAGAAAATTGAACAAAAACTTCCAGAGAA 332791 Query 46746 GAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG 46805 ||| || || || ||| || ||||| | | ||| || | | ||| || Sbjct 332790 GAAAATTCCCTCCACACATGCAAATGCCAACAATCTTTCAGCAAACAAATTCTCAGAATT 332731 Query 46806 AATCCACCTTTGA--GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCA 46863 |||||| ||| | ||||| | ||| || || | || | || | ||| || || ||| Sbjct 332730 AATCCA--TTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGGCA 332673 Query 46864 TTAAAGAGAAAGtttttttCATCACTA-TCTTTAA-CATATGTATCTATTAAAAGACTAT 46921 | ||| ||| ||| |||| || | ||||||| || | || || || | | ||||| Sbjct 332672 TGAAATAGACGATTTCTTTC-TCTTTGGTCTTTAATCAGA-GTTTCAATGAGAGTACTAT 332615 Query 46922 ACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 46981 ||||||| | |||||| |||||||| || || |||||||| || |||||||||||||| | Sbjct 332614 ACATTTCAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTG 332555 Query 46982 TAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAG 47041 | || || | || ||| ||| | | | ||| ||||| || ||||||||||| | Sbjct 332554 GTACTTGAACTTGTGCCATGAATTGTTGACATAGATTTTCATTGACAATTCCATCACTGG 332495 Query 47042 CAGCAAAAAATGCCAATACATGT-TTAATAAAATATTTTTCATCGGTAGTCAGTTTATTC 47100 | ||||| || |||| || ||| || || |||| || ||||| | | | ||||| | | Sbjct 332494 CTGCAAAGAAGGCCAGCAC-TGTCTTGATGAAATGTTGTTCATTAGAATTGAGTTTTTCC 332436 Query 47101 CAGTCATTGATATCTTT-TGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGC 47159 || ||| | ||||| | ||| | ||| || || || ||||||||||||| ||| || Sbjct 332435 CATTCAGTTATATCAGTGTGA-AGATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGT 332377 Query 47160 TTTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGG 47219 ||||| ||||| | ||| || | | |||| || | ||||| | |||||| | || || Sbjct 332376 CTTTTTGTACATTTCCCACATTTTAGGATAATGAAGTGGAAAGAGAACAAAACGATGAGG 332317 Query 47220 ATTTT 47224 ||||| Sbjct 332316 ATTTT 332312 >seq62 Length=286411 Score = 192 bits (212), Expect = 8e-44 Identities = 411/604 (68%), Gaps = 10/604 (2%) Strand=Plus/Plus Query 46626 TAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGT 46685 |||||| ||||||||| || | |||||||| | |||||||| || || |||| Sbjct 259942 TAAACAGGCAAAATCAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAATGC 260001 Query 46686 GAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAA 46745 | |||||||| || ||||| || || | |||||| || | |||||| ||||| || Sbjct 260002 CAAACCAGGCATGAGACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAGAA 260061 Query 46746 GAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCG--TAACTGGCATCATTA 46803 ||| || ||||| ||| || || || | | | || | ||| | |||||| Sbjct 260062 GAAAATACCTTCAACACAAGCAAAGGCCAATAAACGTTCGGCAAATAAATTC--TCATTA 260119 Query 46804 TGAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCA 46863 | ||||| | ||||||| ||||| || | |||| | || | || || || ||| Sbjct 260120 TTGATCCATTTCATAGCCCAACGTGCCTTCTTTTGTACAGATGGAACAGTATCAATGGCA 260179 Query 46864 TTAAAGAGAAAGtttttttCATCACT-ATC-TTTAACATATGTATCTATTAAAAGACTAT 46921 || || | | | | |||| || | ||| |||| || | || || || | ||||| Sbjct 260180 TTGAACAAACGATGTCTTTC-TCTTTGATCCTTTATCAAA-GTTTCAATGAGTGTACTAT 260237 Query 46922 ACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 46981 ||||||| | ||| || ||||||||||| || || || ||||| |||||||| ||||| | Sbjct 260238 ACATTTCAGCATGGATATTTTCAATAGCAATTTGGAAACCGTAGAAACATCTCGCTTCTG 260297 Query 46982 TAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAG 47041 || |||||||| | |||| ||| ||||||| ||||| || || || || | Sbjct 260298 GTATTTGTACCTCAGCCATAAATTGTTGGCACAAATTTTCATTGACAATACCGTCGGACG 260357 Query 47042 CAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCC 47101 ||||||| || || || ||| || ||||| | || ||| | | |||| | ||| Sbjct 260358 CAGCAAAGAAAGCTAAAACACTCTTGATAAAGTGTTGTTCGTTTGGTGTCAAGGTGGTCC 260417 Query 47102 AGTCATTGATATC-TTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCT 47160 | | | ||||| | ||| | ||| ||||||||||| |||||||| || ||| || Sbjct 260418 ATTGTGTAATATCAGTGTGA-AGATCAACTTCTTCAGCAGTCCAGAAGGATGCCATGGCC 260476 Query 47161 TTTTTATACATATTCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGA 47220 || |||||||| | ||| || | |||||| || || || | ||||| | | |||| Sbjct 260477 TTCTTATACATTTCCCAAATCTTTGGATATTCGAGAGGGAATAAGACAAAACGGTGTGGA 260536 Query 47221 TTTT 47224 |||| Sbjct 260537 TTTT 260540 >seq231 Length=8293 Score = 174 bits (192), Expect = 2e-38 Identities = 291/410 (71%), Gaps = 8/410 (2%) Strand=Plus/Minus Query 46819 GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 46878 ||||| | ||| || || | || | || | ||| || || |||| ||| ||| ||| Sbjct 1288 GCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAATAGACGATTT 1229 Query 46879 ttttCATCACTA-TCTTTAA-CATATGTATCTATTAAAAGACTATACATTTCTGAATGAA 46936 |||| || | ||||||| || | || || || | | |||||||||||| | ||||| Sbjct 1228 CTTTC-TCTTTGGTCTTTAATCAGA-GTTTCAATGAGAGTACTATACATTTCAGCATGAA 1171 Query 46937 TGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTG 46996 | |||||||| || || |||||||| || |||||||||||||| | | || || | || Sbjct 1170 TATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTCTGGTACTTGAACTTGTG 1111 Query 46997 TACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCA 47056 ||| ||| | | | ||| ||||| || ||||||||||| || ||||| || |||| Sbjct 1110 CCATGAATTGTTGACATAGATTTTCATTGACAATTCCATCACTGGCCGCAAAGAAGGCCA 1051 Query 47057 ATACATGT-TTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCT 47115 || ||| || || |||| || ||||| | | ||||| | ||| ||| | ||||| Sbjct 1050 GCAC-TGTCTTGATGAAATGTTGTTCATTAGAGTTGAGTTTTTCCCATTCAGTTATATCA 992 Query 47116 TT-TGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATT 47174 | ||| | ||| || || || ||||||||||||| ||| || ||||| ||||| | Sbjct 991 GTGTGA-AGATCAACCTCCTCCACTGTCCAGAATGAAGCCATTGTCTTTTTGTACATTTC 933 Query 47175 CCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTT 47224 ||| || | | |||| || | ||||| | |||||| | || ||||||| Sbjct 932 CCACATTTTAGGATAATGAAGTGGAAAGAGAACAAAACGATGAGGATTTT 883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712927413242880