Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq62 259 5e-64 seq9 219 4e-52 seq231 156 4e-33 seq79 134 1e-26 >seq62 Length=286411 Score = 259 bits (286), Expect = 5e-64 Identities = 578/854 (68%), Gaps = 28/854 (3%) Strand=Plus/Plus Query 23223 ATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAAT-GATATATTTTCCA 23281 |||||| ||||| |||| || || ||||||||||| |||| || ||| | | || Sbjct 259657 ATATTCACCAACTTTCTTTTCAAAGAAGTTTGTCTTACCA-CTAACAGAAATAATGTTCA 259715 Query 23282 TAAAATCAAATGGATTAGAAGTATTATATACAGCTTTACATGATAA-----TTCCTTTAA 23336 | |||| |||||||| | || ||| || | ||| ||| | | | || || Sbjct 259716 TCCAATCGAATGGATTTGGAGAATTGTAAAT--CTTATCATAACCAAGGGATACC---AA 259770 Query 23337 AAGCCTATCTGCTACAAATTCAATATATTGACACATCAAATCATAGTTTATACCTATTAG 23396 ||| ||||| || || | |||||| ||||| ||| ||| | |||| ||||| || | Sbjct 259771 AAGTCTATCAGCAACCATTTCAATGTATTGTTGCATTAAACGAGAGTTCATACCAATCAA 259830 Query 23397 TTTTACTGGAATCGCATCATATAAGAATAGTTTTTCAATGGAAACAGCATCTTTAATTAT 23456 | |||||| | ||| | | |||| |||||||| |||||| || || || Sbjct 259831 ATCTACTGGCAAACTTTCACAAATGAATTCCTTTTCAATTTCAACAGCTTCAGAAACTAG 259890 Query 23457 T---TGAACAATAACTTCTTCA--CTAGGTGGATATTTTAAATACTTAA-ACAATAAACA 23510 | ||||||| ||| || | | ||| | || ||| || | |||||||| Sbjct 259891 TGAGTGAACAA---CTTGTTGCGGCAATTTGGTAAACTTCAATGTGGAATATAATAAACA 259947 Query 23511 TGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCC 23570 ||||||||| |||| |||||||| | || |||||||| || |||| || || Sbjct 259948 GGCAAAATCAGTGTGTAATCCTTCATCACGGGAGATTAATTCATTGGAGAATGCCAAACC 260007 Query 23571 TGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAAT 23630 ||||| | || ||||| || | |||||| || | | || || || || |||||||| Sbjct 260008 AGGCATGAGACCACGTTTCTTCAACCAAAAAATGGAACAGAAAGAACCAGAGAAGAAAAT 260067 Query 23631 ACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGAAAT 23690 ||| |||||| |||||||||| | |||| ||||| ||| | || | || Sbjct 260068 ACCTTCAACACAAGCAAAGGCCAATAAACGTTCGGCAAATAA---ATTCTCATTATTGAT 260124 Query 23691 CCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAA 23750 |||||| | | |||| |||||| || |||| | || || ||||| || || || Sbjct 260125 CCATTTCATAGCCCAACGTGCCTTCTTTTGTACAGATGGAACAGTATCAATGGCATTGAA 260184 Query 23751 GAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTC 23810 | | | | ||||| | ||| |||| | || ||||| ||| |||||||||||| Sbjct 260185 CAAACGATGTCTTTCTCTTTGATCCTTTATCAAAGTTTCAATGAGTGTACTATACATTTC 260244 Query 23811 AGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTG 23870 || ||| ||||||||||||||||| || || || || |||||||| ||||| | | ||| Sbjct 260245 AGCATGGATATTTTCAATAGCAATTTGGAAACCGTAGAAACATCTCGCTTCTGGTATTTG 260304 Query 23871 AACATCATTAAAAAATCTTTTAGC-TAAATTTTCGTTAACAATACCATCACTAGCAGCAA 23929 || ||| | |||| | || || |||||||| || |||||||| || ||||||| Sbjct 260305 TACCTCAGCCATAAAT-TGTTGGCACAAATTTTCATTGACAATACCGTCGGACGCAGCAA 260363 Query 23930 AGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAATCAT 23989 ||||||| | |||| || ||||| ||| ||| | | || || | |||| | Sbjct 260364 AGAAAGCTAAAACACTCTTGATAAAGTGTTGTTCGTTTGGTGTCAAGGTGGTCCATTGTG 260423 Query 23990 TAATATC-TTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCTTA 24048 ||||||| | ||| | ||||||||| ||| | ||||| || ||||| ||| |||| Sbjct 260424 TAATATCAGTGTGA-AGATCAACTTCTTCAGCAGTCCAGAAGGATGCCATGGCCTTCTTA 260482 Query 24049 TACATTAGCCAAAT 24062 |||||| |||||| Sbjct 260483 TACATTTCCCAAAT 260496 >seq9 Length=695587 Score = 219 bits (242), Expect = 4e-52 Identities = 371/531 (70%), Gaps = 15/531 (3%) Strand=Plus/Minus Query 23505 TAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGT 23564 ||||||||| ||||| ||||| |||||||| | | |||||||||||||| |||| Sbjct 332910 TAAACATGCGAAATCTGTATGTAACCCTTCATCACGAGATATCAATTCATTAGAGAATGA 332851 Query 23565 TAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGGAAAA 23624 ||| || ||||| | || ||||| || | ||| || |||| | ||| ||| || || Sbjct 332850 TAAACCAGGCATCAGACCACGTTTCTTTAACCAGAAAATTGAACAAAAACTTCCAGAGAA 332791 Query 23625 GAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATC 23684 |||||| ||||| ||| ||||| |||| | | | | |||| || || || Sbjct 332790 GAAAATTCCCTCCACACATGCAAATGCCAACAATCTTTCAGCAAA-----CA-AATTCTC 332737 Query 23685 AGA---AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAAT 23741 ||| ||||||||| || ||| ||||| ||| || || | | ||| ||||| Sbjct 332736 AGAATTAATCCATTTCAATGCCCAGTTAGCTTTCTTTTGAACTGATGGTACTGTATCAAT 332677 Query 23742 TGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACT 23801 || | || ||| | || ||||| | ||| | || || ||||| || ||| Sbjct 332676 GGCATGAAATAGACGATTTCTTTCTCTTTGGTCTTTAATCAGAGTTTCAATGAGAGTACT 332617 Query 23802 ATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTC 23861 ||||||||||| ||||||||||||||| ||||| ||||| ||||| |||||||| ||||| Sbjct 332616 ATACATTTCAGCATGAATATTTTCAATGGCAATTTGAAATCCATAGAAACATCTTGCTTC 332557 Query 23862 AGACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACT 23921 | | |||||| | | ||| || | || |||||| || ||||| |||||||| Sbjct 332556 TGGTACTTGAACTTGTGCCATGAATTGTTGACATAGATTTTCATTGACAATTCCATCACT 332497 Query 23922 AGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAG--TTGATAATTTT 23979 || |||||||| || || || || || |||||| ||||| || ||| | |||| Sbjct 332496 GGCTGCAAAGAAGGCCAGCACTGTCTTGATGAAATGTTGTTCATTAGAATTG--AGTTTT 332439 Query 23980 TTCCAATCATTAATATC-TTTTGATAAATCAACTTCATCAACTGTCCAAAA 24029 | ||| ||| | ||||| | ||| | |||||| || || |||||||| || Sbjct 332438 TCCCATTCAGTTATATCAGTGTGA-AGATCAACCTCCTCCACTGTCCAGAA 332389 >seq231 Length=8293 Score = 156 bits (172), Expect = 4e-33 Identities = 303/441 (69%), Gaps = 15/441 (3%) Strand=Plus/Minus Query 23595 CCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCAC 23654 ||| || |||| | ||| ||| || |||||||| ||||| ||| ||||| |||| Sbjct 1391 CCAGAAAATTGAACAAAAACTTCCAGAGAAGAAAATTCCCTCCACACATGCAAATGCCAA 1332 Query 23655 AAGACGTGTACCAAATGTTGCATTATAATCAGAA---ATCCAtttttttGTCCAATTAGC 23711 | | | | |||| || || |||||| |||||||| || ||| ||||| Sbjct 1331 CAATCTTTCAGCAAA-----CAA-ATTCTCAGAATTAATCCATTTCAATGCCCAGTTAGC 1278 Query 23712 CTTCAATTTTACACACTCAATTGTTTCAATTGCTTTTAAGAGAAAAGTTTTTTCTTCATT 23771 ||| || || | | ||| ||||| || | || ||| | || ||||| | Sbjct 1277 TTTCTTTTGAACTGATGGTACTGTATCAATGGCATGAAATAGACGATTTCTTTCTCTTTG 1218 Query 23772 ATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGC 23831 ||| | || || ||||| || |||||||||||||| ||||||||||||||| || Sbjct 1217 GTCTTTAATCAGAGTTTCAATGAGAGTACTATACATTTCAGCATGAATATTTTCAATGGC 1158 Query 23832 AATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAAAAAATCTTTT 23891 ||| ||||| ||||| |||||||| ||||| | | |||||| | | ||| || Sbjct 1157 AATTTGAAATCCATAGAAACATCTTGCTTCTGGTACTTGAACTTGTGCCATGAATTGTTG 1098 Query 23892 AGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTAT 23951 | || |||||| || ||||| |||||||| || |||||||| || || || || || Sbjct 1097 ACATAGATTTTCATTGACAATTCCATCACTGGCCGCAAAGAAGGCCAGCACTGTCTTGAT 1038 Query 23952 AAAATGTCTTTCAT--CAGTTGATAATTTTTTCCAATCATTAATATC-TTTTGATAAATC 24008 |||||| ||||| ||||| | ||||| ||| ||| | ||||| | ||| | ||| Sbjct 1037 GAAATGTTGTTCATTAGAGTTG--AGTTTTTCCCATTCAGTTATATCAGTGTGA-AGATC 981 Query 24009 AACTTCATCAACTGTCCAAAA 24029 ||| || || |||||||| || Sbjct 980 AACCTCCTCCACTGTCCAGAA 960 >seq79 Length=326815 Score = 134 bits (148), Expect = 1e-26 Identities = 218/309 (71%), Gaps = 5/309 (2%) Strand=Plus/Plus Query 64428 ATGTTATTGGAATTGATGAAGGGCAATTTTTTACTGATATAGTTGAATTTTCTGAAAATA 64487 |||||||||| ||||||||||| ||||| || ||||| | |||||||| | |||| | Sbjct 192786 ATGTTATTGGTATTGATGAAGGTCAATTCTTCCCTGATTTGGTTGAATTCTGTGAAGCTG 192845 Query 64488 TGGCCAATAAAGGAAAAATTGTAATTGTTTCAGCGTTAGATGCGACATATAAAAGAGAAC 64547 || ||| ||| ||||||||||||||| || || |||| || | ||||| ||| Sbjct 192846 CTGCTAATGGAGGTAAAATTGTAATTGTTAGTGCTTTGGATGGTACTTTCCAAAGAAAAC 192905 Query 64548 CATTTGGTAATATCCTAAATCTAGTTCCATTAGCTGAAAAAGTAATAAAATTAAATGCTA 64607 |||||| ||| | || | |||||| | ||||||| || | ||| | || ||| Sbjct 192906 AATTTGGAAATGTTCTTTCATTGGTTCCAATGGCTGAAAGTGTTGTGAAACTTAAGGCTG 192965 Query 64608 TATGTAAAATATGTTTCAAAGATGCTGCATTTACTAAAAG-ATTA-TGCAAAAGTACTGA 64665 | |||| | ||| ||||||||||| || ||||| | || | || || || | Sbjct 192966 TTTGTATGGTTTGTGGTAAAGATGCTGCCTTCTCTAAACGTATCACTGATGAACAAC--A 193023 Query 64666 AATCGAATTAATTGGTGGAGAGGACAAATATAGTTCCGTGTGTAGAAAGTGTTATTTTAC 64725 || ||| | ||||||||| || || |||| | || ||||||||||||||| | || Sbjct 193024 AACTGAAGTTATTGGTGGATCTGATAAGTATATTGCCACTTGTAGAAAGTGTTATATGAC 193083 Query 64726 ATATAAATA 64734 || ||||| Sbjct 193084 -TAGAAATA 193091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521482889417600