Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Naegleria_20gruberi_20[genbank_20GCA_5F000004985.1_202010-01-20] 784 sequences; 40,964,085 total letters Query= NC_033423.1 Length=208501 Score E Sequences producing significant alignments: (Bits) Value seq102 122 1e-22 seq28 100 4e-16 >seq102 Length=34929 Score = 122 bits (134), Expect = 1e-22 Identities = 374/572 (65%), Gaps = 10/572 (2%) Strand=Plus/Plus Query 50300 ATTCCCTCTATTTACGACTaaaaaaaTGTTTTGGCGCGGAATAGCGGAAGAACTTTTATG 50359 ||| || |||| || ||||||| | | |||||| || | || ||||| | || || Sbjct 31996 ATTTCCATTATTAACAACTAAAAGAGTATTTTGGAAAGGTGTTGCTAAAGAATTATTTTG 32055 Query 50360 GTTCCTCGACGGATCTACAAATTCTTTAAAGTTATCGGAGAAGTCCGTTCGTATATGGGA 50419 |||| | ||| ||||||| || || ||||| || | ||| ||| ||||| Sbjct 32056 GTTCATTTCTGGAAGTACAAATGCTAAAATTTTATCTGAACAAGATATTCATATTTGGGA 32115 Query 50420 CGCTCACGGTTCCAGATCAAATTTAGATCGTTTAGGATTTAATTACAGA-AACAAAGGAG 50478 | | || || ||| | |||||||| || |||||| | | | || | | | | Sbjct 32116 TGGAAATGGATCGAGAGAATATTTAGATTCATTGGGATTTGAGAATCGTGAAGAGATG-G 32174 Query 50479 ATTTAGGACCTGTTTACGGTTTTCAATGGAGACATTTTGG-AGCGCGTTACATAAATTGC 50537 |||| || |||||||| ||||||||||||||||||| || || | | | || ||| Sbjct 32175 ATTTGGGTCCTGTTTATGGTTTTCAATGGAGACATTGGGGTAGTTCATATGAAAATATGC 32234 Query 50538 GACGTAAATTACGAAGGTCAAGGCGTGGATCAACTGCAAAAAATTATAACGACGTTGAAA 50597 | | |||| | | | || || |||||| || | ||| ||| || || || Sbjct 32235 -ATACAGATTATACAAATAAGGGAGTTGATCAATTGAAGAAATGTATTGAAACTTTAAAG 32293 Query 50598 ACAAACCCCGACGATCGGCGTATTTTAATGACCGCCTGGAATCCAACCGATATAGATCAA 50657 | || || || | |||||| || | | || |||||| | | ||| || | | Sbjct 32294 AATAATCCAACTAATAGACGTATTATATTATCTGCATGGAATGTATCAGATTTACCTAAT 32353 Query 50658 ACCGTTTTACCTCCGTGTCATGTTTTATGTCAATTTTATGCC---ACAGACA---ATGTT 50711 | | ||||| || |||||| | | |||||||||| | ||||| | ||| Sbjct 32354 ATGGCATTACCACCTTGTCATTTAATGTGTCAATTTTGGGTAGATACAGATACTAATGAA 32413 Query 50712 TTATCCTGTCAATGTTATCAAAGATCAGCTGATATGGGTTTAGGCGTTCCTTTCAACGTA 50771 ||| |||||| |||||||||||| ||||||||| ||||| ||||| || || | Sbjct 32414 TTAAGTTGTCAAATGTATCAAAGATCATGTGATATGGGATTAGGTGTTCCATTTAATATT 32473 Query 50772 GCTTCTTACGCTTTATTAACGTATTTGATCGCTCAAGCCGTCGATATGAAACCGGGAGAA 50831 || || || ||||||||||| || || || |||| || | ||||| || || Sbjct 32474 GCATCATATGCTTTATTAACAAGATTAATGGCACAAGTTTGTAATTTAAAACCTGGTGAT 32533 Query 50832 TTTATTCATACGTTAGGAGACGCTCATATTTA 50863 ||||||||||| || || || | ||| |||| Sbjct 32534 TTTATTCATACATTGGGTGATACACATGTTTA 32565 >seq28 Length=413107 Score = 100 bits (110), Expect = 4e-16 Identities = 130/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 155864 GTGCACCTTTAAAATTTGAAGACGCCCCTTTTCATCGGGTAATCCAATTTCTATCTTCAA 155923 ||| | ||| || ||||| | ||| || || ||||| ||||| |||||||| || | | Sbjct 384524 GTGAATCTTCAAGATTTGTAAACGACCATTCTCATCTGGTAAACCAATTTCCATTTGAAC 384465 Query 155924 TTCCAACCGCCCAGGTCTTAATAATGCTTCGTCAATTAAGTCGGGTCTGTTGGTCATACC 155983 ||| || | || || | ||| | ||||| ||||| | ||| ||||||||||||||| Sbjct 384464 TTCAAATCTACCTGGACGTAAAAGAGCTTCATCAATCATGTCCAATCTGTTGGTCATACC 384405 Query 155984 TATGATTAAAATGTTGTTTAAAGATTCTACACCGTCTATTTTAGACAATAATTGATTGAC 156043 || || ||||| ||||| | || | ||||| || || ||| ||| ||||| || || Sbjct 384404 AATAATCAAAATATTGTTAAGTGAGTTGACACCATCAATCTTACTCAACAATTGGTTAAC 384345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 667068662663040