Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq101 93.3 9e-14 >seq101 Length=873781 Score = 93.3 bits (102), Expect = 9e-14 Identities = 171/247 (69%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 230395 GAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTTATTGGC 230454 ||||| ||||| | || ||||| ||| |||| || || | ||| | ||| |||||| Sbjct 439185 GAAGCTGTTGAGATTGAGAAGGAATTCGTTTGCGATGCGCTACCAGTTGACCTCATTGGC 439126 Query 230455 ATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCA 230514 ||||| || || ||| ||||||||||| || || || ||||| | | | ||| Sbjct 439125 ATGAATTCTCTCCTGATGTCGCAGTACATCGAGTTTGTGGCTGACCGGTTGCTGGCTGCG 439066 Query 230515 CTTGG--TTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTT 230572 || || || ||| | | | | || || || ||||| || | | ||||| || || Sbjct 439065 CTGGGCCTTCCGAAACACTACA-AAGTCGAA-AACCCGTTCGAGTGGATGGACCTGATCA 439008 Query 230573 CGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTG 230632 ||||| || ||||| ||||||||||| || || ||| |||| || || | | | |||| Sbjct 439007 GCCTTCAGGGCAAGACGAACTTCTTCGAGAAACGAGTCGGTGAATACCAAAAGGCCGGTG 438948 Query 230633 TGATGAA 230639 | ||||| Sbjct 438947 TCATGAA 438941 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057821763693950