Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq101 84.2 2e-11 >seq101 Length=873781 Score = 84.2 bits (92), Expect = 2e-11 Identities = 167/242 (69%), Gaps = 18/242 (7%) Strand=Plus/Plus Query 16382 ATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTA 16441 ||||| ||| || |||||| ||||| | | | ||| ||||| || || || || Sbjct 439529 ATCCAGTTCAGTGCCCATTTTGCTTTCTTCTGGACACACGGAATCGTCTCGATCGCGTTG 439588 Query 16442 AACAA------TTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 ||||| |||||||| | |||| || | |||||||| || |||| || | Sbjct 439589 AACAACCGTTGTTTCTCTT----CGGAATTTC--TGATATACGTGTCGATCAACAACGAG 439642 Query 16496 TACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCC 16555 ||| | || ||||| |||||||| || || | || ||||||||||||||||| | || Sbjct 439643 TACGTCTCCGAGTGAATGTTCTCCATAGCAAGTTGGAATCCATAGAAGCATCGCACTTCT 439702 Query 16556 GCTATTTGTACTTCCACGTA-AAATCG--TTCCGCCAGGTTCTCATTCACGATACCGTCA 16612 | ||| |||| |||| | || || ||| | |||||||| ||||||||| ||| Sbjct 439703 GGCCATTGCACTT-CACGCAGGAACCGACTTC--CAAGGTTCTCCAACACGATACCATCA 439759 Query 16613 CT 16614 || Sbjct 439760 CT 439761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511413345207800