Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq112 113 4e-20 seq122 98.7 8e-16 seq83 84.2 2e-11 >seq112 Length=800634 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || || | ||||| || |||||||| || ||||| ||||| || Sbjct 314033 CCACCACGCAGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCG 314092 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||||||||| ||||| || | || || | |||||||||| || Sbjct 314093 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 314152 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| ||||| || |||||| |||||| ||| ||||| ||| ||| Sbjct 314153 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATCGCCGCTGTCCACG 314212 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||| |||||||| || | ||| ||||| || || ||||| Sbjct 314213 TCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 314259 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || || | ||||| || |||||||| |||||||| ||||||||| Sbjct 315091 CCGCCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCC 315150 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||||||||| ||||| ||| | || || | ||||||||| || Sbjct 315151 AGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGG 315210 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| ||||| || |||||| |||||| ||| || || ||| ||| Sbjct 315211 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTGTCGCCGCTGTCCACA 315270 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||||| |||||||| || | || || || || || ||||| Sbjct 315271 TCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 315317 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || || | |||||| || |||||||| || ||||| ||||| || Sbjct 314264 CCACCACGCAGACGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 314323 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||||||||| ||||| || | || || | ||| |||||| ||| Sbjct 314324 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGA 314383 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| ||||| ||||| ||| || ||||| | || Sbjct 314384 ATACCCTCCTTGTCCTGAATCTTGGCCTTCACAGTTTCGATCGTGTCACCCGAGTCGACG 314443 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||||||||||| || || | ||| ||||| || || ||||| Sbjct 314444 TCAAGCGTAATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 314490 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || || | ||||| || |||||||| || ||||| ||||| || Sbjct 314860 CCACCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 314919 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | | ||||||||||| || || || |||| || | ||| || || || Sbjct 314920 AGGGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATCAGACGCTGTTGATCAGGAGGG 314979 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| ||||| ||| ||| ||| || || || | || Sbjct 314980 ATGCCCTCCTTGTCCTGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGACA 315039 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| || ||||||||||| || | ||| ||||| || || ||||| Sbjct 315040 TCCAATGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 315086 >seq122 Length=778307 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| || |||||||| || ||||| ||||| ||||| || || ||||||||||||| Sbjct 341109 TGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGC 341168 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 || || ||| | || || | ||| |||||| || | ||| |||||||| |||||| Sbjct 341169 TTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTG 341228 Query 21093 TGTTTCACCTGGC--CGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGG 21150 || || ||| ||| || || | | || || | || || |||||||||| Sbjct 341229 GCCTTGAC--GGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTGCCGG 341286 Query 21151 TTAACGTTTTGACAAATATTTGCAT 21175 | | ||| ||||| ||||||||||| Sbjct 341287 TAAGCGTCTTGACGAATATTTGCAT 341311 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 ||||||||||| || ||||| |||||||| || || | ||||||||||||| || ||| Sbjct 759251 GTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCCTCCAGCTGCTTCCCC 759310 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || | ||||||||| || | |||||||||||| ||||| || Sbjct 759311 GCAAAGATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGAATCTTCGCCTTG 759370 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || ||| || ||||| | || |||| || |||||||| || || | ||| Sbjct 759371 ACAGTCTCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGTCTTCCCAGTGAGCGTC 759430 Query 21159 TTGACAAATATTTGCAT 21175 || || || || ||||| Sbjct 759431 TTCACGAAGATCTGCAT 759447 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | ||||||| |||| ||| ||||| || || ||||| ||||| | Sbjct 759450 TTCCGCCACGAAGACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGG 759509 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 | || || | | ||||| ||||| ||||| || | || || | ||||||||| | Sbjct 759510 CAAGCGTGCGTCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCG 759569 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || |||||||| |||||| ||||| ||| || |||||| || Sbjct 759570 GAATACCCTCCTTGTCCTGGATCTTGGCCTTCACGGTCTCGATCGTGTCACCGCTGTCGA 759629 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | |||||||||||||| || | || || || || || ||||| Sbjct 759630 CGTCGAGCGTAATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 759678 >seq83 Length=380421 Score = 84.2 bits (92), Expect = 2e-11 Identities = 104/140 (74%), Gaps = 2/140 (1%) Strand=Plus/Minus Query 23811 GTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGCGCCGTGTCTCTGGCGGGT 23870 |||||| |||||||||||||| ||||| | | || |||||||||| || ||| || | Sbjct 22495 GTTGCCAAGGTCGCCGACGTGCCGCTCGGTGTCGGCGGGCGCGCCATGCGTCTTGCCGAA 22436 Query 23871 GGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGC-TGGTGTCGCCGAATTCGTGCA 23929 || || ||||| |||| | || | ||| || |||| | ||||||||| || || | Sbjct 22435 CGGATTGTAGTGCCCGCCGGTCGATGCGCA-CCCTTGCGTCGTGTCGCCGTGCTCATGGA 22377 Query 23930 CGTGAAAACCGTGCAGCCCG 23949 |||| || |||||| | ||| Sbjct 22376 CGTGGAAGCCGTGCTGGCCG 22357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422258350863140