Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq112 149 6e-31 seq122 143 3e-29 seq1 129 6e-25 seq101 111 2e-19 seq83 109 6e-19 >seq112 Length=800634 Score = 149 bits (164), Expect = 6e-31 Identities = 162/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| |||||||| |||||||| | || ||||| | | Sbjct 315086 ATGCAGATCTTCGTCAAGACGCTTACGGGCAAGACCATCACATTGGATGTCGACTCAGGC 315027 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| |||| | || |||| ||||| ||||||||||| | || || Sbjct 315026 GACACGATCGAGACGGTCAAAGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAA 314967 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| || || |||||||| || | ||||||||| |||||||||| Sbjct 314966 CAGCGTCTGATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAAC 314907 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | ||||||||||| || |||| Sbjct 314906 ATCCAGAAGGAGTCGACGCTGCATCTCGTCCTGCG 314872 Score = 145 bits (160), Expect = 8e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| |||||||| || || || | ||||| || | | Sbjct 314259 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACGATTACACTGGACGTGGACAGCGGC 314200 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| | |||| || || | || || ||||||||||| |||||||| Sbjct 314199 GATACGATCGAGACGGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCGGACCAG 314140 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| || | ||||||||| |||||||||| Sbjct 314139 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAAC 314080 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | || |||||||| || |||| Sbjct 314079 ATCCAGAAGGAGTCGACACTGCATCTCGTCCTGCG 314045 Score = 145 bits (160), Expect = 8e-30 Identities = 161/215 (75%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || || || ||||| || | |||||||| | Sbjct 314490 ATGCAGATCTTCGTCAAGACGCTGACAGGGAAGACCATTACGCTTGACGTCGACTCGGGT 314431 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | |||| | |||| || |||| ||||| ||||| || ||| ||||||| Sbjct 314430 GACACGATCGAAACTGTGAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAA 314371 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| || | ||||||||| |||||||||| Sbjct 314370 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAAC 314311 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| | ||| ||||||| || |||| Sbjct 314310 ATCCAGAAGGAGTCGACGTTGCATCTCGTTCTGCG 314276 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| || || || | || || || | | Sbjct 315317 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACGATTACGCTGGATGTGGACAGCGGC 315258 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | ||| | |||| || || | || || ||||||||||| | |||||| Sbjct 315257 GACACGATCGAGACGGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCTGACCAG 315198 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| |||||||| |||| |||||| || ||||||||| Sbjct 315197 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGGCGCACGCTGGCGGACTACAAC 315138 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||||||| | ||||||||||| || |||| || | ||||| Sbjct 315137 ATTCAGAAGGAGTCGACGCTGCATCTCGTCCTGCGTCTGCGTGGCGG 315091 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || || || ||||| || | |||||||| | Sbjct 314855 ATGCAGATCTTCGTCAAGACGCTGACAGGAAAGACCATTACGCTTGACGTCGACTCGGGT 314796 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | ||||| | |||| || |||| ||||||||||| || ||| |||||||| Sbjct 314795 GACACAATCGAAACGGTGAAGGCCAAGATTCAGGACAAAGAGGGTATTCCCCCGGACCAG 314736 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGA 40844 || || || |||| ||| ||||| |||||||| || Sbjct 314735 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGA 314701 >seq122 Length=778307 Score = 143 bits (158), Expect = 3e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || |||||||| || || |||||||| | || ||||| | Sbjct 759447 ATGCAGATCTTCGTGAAGACGCTCACTGGGAAGACCATCACTCTGGATGTCGATTCTGGT 759388 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | || |||||| || |||| ||||| || |||||||| | |||||| Sbjct 759387 GACACCATCGAGACTGTCAAGGCGAAGATTCAGGACAAGGAAGGCATCCCGCCAGACCAG 759328 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||||| || |||||||| |||| |||||| ||| ||||||||| Sbjct 759327 CAGCGTCTGATCTTTGCGGGGAAGCAGCTGGAGGACGGGCGCACGCTCGCGGACTACAAC 759268 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || || || Sbjct 759267 ATCCAGAAGGAGTCCACCCTCCACCTTGT 759239 Score = 129 bits (142), Expect = 6e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||||||||| || ||||| || ||||| || ||||| |||| || | | | Sbjct 341311 ATGCAAATATTCGTCAAGACGCTTACCGGCAAGACGATCACACTCGATGTGGCGTCGTCG 341252 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | |||||| || || | ||||| |||||||| || ||||||| Sbjct 341251 GACACGATCGAGGCCGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAA 341192 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || || |||||||| |||| ||||| || |||||||||| Sbjct 341191 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGCACGCTGGCCGACTACAAC 341132 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | |||||||| || || Sbjct 341131 ATCCAGAAGGAGTCGACGCTGCACCTCGT 341103 Score = 122 bits (134), Expect = 9e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || |||||||| ||||| || |||||||||| | Sbjct 759678 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATTACGCTCGACGTCGACAGCGGT 759619 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | || | |||| || || | ||||| ||||| || || | |||||| Sbjct 759618 GACACGATCGAGACCGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCGCCCGACCAG 759559 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || || | ||||| || |||||||||| Sbjct 759558 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGACGCACGCTTGCCGACTACAAC 759499 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||| ||| | || ||||| || ||| |||| Sbjct 759498 ATCCAGAAAGAGTCGACTCTGCACCTGGTGCTGCG 759464 >seq1 Length=1189627 Score = 129 bits (142), Expect = 6e-25 Identities = 154/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || ||||| || || ||||| |||| ||||| | | Sbjct 523755 ATGCAGATCTTCGTGAAGACCCTGACGGGTAAGACGATCACGCTCGATGTCGACTCGGGC 523696 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | || |||||| || || | ||||| ||||| || || ||||||| Sbjct 523695 GACACGATCGAGACCGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAA 523636 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || || | |||||| ||| |||||||||| Sbjct 523635 CAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGGCGCACGCTCGCCGACTACAAC 523576 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | ||| |||| || || Sbjct 523575 ATCCAGAAGGAGTCGACGTTGCACCTCGT 523547 >seq101 Length=873781 Score = 111 bits (122), Expect = 2e-19 Identities = 277/429 (65%), Gaps = 54/429 (13%) Strand=Plus/Minus Query 116822 GAGGTGCAGGTGGCC-GAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGT 116880 || ||||| ||||| || | ||| |||||||| || || || | || ||||||||| | Sbjct 439716 GAAGTGCAA-TGGCCAGAAGTGCGATGCTTCTATGGATTCCAACTTGCTATGGAGAACAT 439658 Query 116881 GCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCT 116940 |||||||| | ||| ||| | ||||||||||| | | ||| || ||||| | Sbjct 439657 TCACTCGGAGACGTACTCGTTGTTGATCGACACGTATATCAGAAATTCCGAAGAGAAACA 439598 Query 116941 CCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCT 117000 || ||||| ||||| ||||||||||| ||||| ||| | |||| || | ||||| || Sbjct 439597 ACGGTTGTTCAACGCGATCGAGACGATTCCGTGTGTCCAGAAGAAAGCAAAATGGGCACT 439538 Query 117001 GCGCTGGATCG---------------CCGGCAG------------------AGAGGCCGC 117027 | |||||||| ||| || || ||||| Sbjct 439537 GAACTGGATCGGAGACGACTCGACATTCGGTAGTGTACTTGTGCTGTGAATCGACGCCGC 439478 Query 117028 CTTC------------------GGCGA-GCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCG 117068 | || |||| || || ||||| ||||| || ||||| ||| Sbjct 439477 CATCAACTGACAGATGCTTCCTAGCGATCCGGCTTGTGGCGTTCGCAGCAGTCGAAGGCA 439418 Query 117069 TCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCG 117128 | ||||| || ||| | | || || ||||| || || || || || |||| || Sbjct 439417 TTTTCTTCAGCGGATCGTTCTGCTCGATTTTCTGGCTGAAAAAGCGGGGGCTTATGCACG 439358 Query 117129 GCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCT 117188 | || | |||||||| ||||| || || | ||||| || ||||||||||| ||||||| Sbjct 439357 GGTTGTCGTTCAGCAATGAGCTTATATCTCGCGACGAAGGGCTGCATTGCGATTTTGCCT 439298 Query 117189 GTTTGCTGT 117197 ||||||||| Sbjct 439297 GTTTGCTGT 439289 Score = 104 bits (114), Expect = 2e-17 Identities = 149/205 (73%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||||| |||||||| ||||||||| | |||||||| | | | | Sbjct 440013 GAGCCCATGCTGATGGAGAACCCGAACCGGTTCGTCCTCTTCCCCATCGAGCATTCATCC 439954 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 | ||| |||||||| || | || ||||||||||||| || ||| | |||||| Sbjct 439953 GTTTGGGAGATGTACAAGAAACATGTCGCATCGTTCTGGACCGCGGAAGAGATTGACCTG 439894 Query 116696 TC-CAAGGACACGAGCGACTGGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGC 116753 || |||| ||| || || |||| | ||||| ||||| ||||| | |||||||||||| Sbjct 439893 TCGCAAGATCACAAG-GATTGGGCGGCGCTT-AACGATGACGAGAGACATTTCATCAAGA 439836 Query 116754 ACGTGCTGGCCTTTTTCGCCGCCAG 116778 |||| |||||||| || ||||| || Sbjct 439835 ACGTCCTGGCCTTCTTTGCCGCAAG 439811 >seq83 Length=380421 Score = 109 bits (120), Expect = 6e-19 Identities = 123/158 (78%), Gaps = 10/158 (6%) Strand=Plus/Plus Query 139361 GGCCTGCCGCGCGGCCTGCACGGCTTCCACGTGCACGAGTTCGGCGACGCGA-GCAACGG 139419 || ||| ||| ||||| ||||||||||||||| || ||| ||||||| ||| |||| || Sbjct 22346 GGGCTGACGCCCGGCCAGCACGGCTTCCACGTCCATGAGCACGGCGACACGACGCAA-GG 22404 Query 139420 GTGCACGTCGGCCGGCGAGCACTTCAACCCCGCGCGCCGGGAC-CACGGCGCGC---CCG 139475 |||| | ||| |||||| ||||| ||| ||| || | ||| || ||||||| ||| Sbjct 22405 GTGCGCATCGACCGGCGGGCACTACAA-TCCGTTCGGCAAGACGCATGGCGCGCCCGCCG 22463 Query 139476 ACGCCGAGATCAGGCACGTCGGCGACCTGGGCAACCTC 139513 || ||||| |||||||||||||||| |||||| || Sbjct 22464 ACACCGAG---CGGCACGTCGGCGACCTTGGCAACATC 22498 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218137360400