Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq122 118 9e-22 seq112 102 7e-17 seq1 100 2e-16 seq68 93.3 4e-14 seq83 87.8 2e-12 >seq122 Length=778307 Score = 118 bits (130), Expect = 9e-22 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || |||||||| || |||||||| ||| | ||||| ||| Sbjct 759466 CAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGTCCATC 759525 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||| || || ||| |||| || |||||||| ||||| || || ||||||||||| Sbjct 759526 CTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTC 759585 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || |||| ||||| ||| ||||| |||| || | || Sbjct 759586 CTGGATCTTGGCCTTCACGGTCTCGATCGTGTCACCGCTGTCGACGTCGAGCGTAATGGT 759645 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 ||||| ||||| || || || || |||||||||| Sbjct 759646 CTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGG 759680 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| || ||||| ||||| ||||| || ||| Sbjct 341115 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTACCA 341174 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| |||||||| || || || || |||||||||||||| || || || Sbjct 341175 GCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTG 341234 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || |||| ||||||| | | || |||| || | ||| |||||||| || || Sbjct 341235 ACGGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTGCCGGTAAGCGTC 341294 Query 118722 TTTACAAAAATCTGCAT 118738 || || || || ||||| Sbjct 341295 TTGACGAATATTTGCAT 341311 >seq112 Length=800634 Score = 102 bits (112), Expect = 7e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| | ||||| |||||| ||||| ||||| Sbjct 314890 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTTCCG 314949 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || |||||||| ||||| ||||| |||||||||||||| ||| || ||| Sbjct 314950 GCGAAAATCAGACGCTGTTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCTTTG 315009 Query 118662 ACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 ||| |||| ||||| | || ||||| || | || | || ||||| || || || Sbjct 315010 ACCGTCTCGATCGTGTCGCCTG-AGTCGACATCCAATGTGATGGTCTTGCCCGTAAGCGT 315068 Query 118721 TTTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 315069 CTTGACGAAGATCTGCAT 315086 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| || || |||||| ||||| ||||| || || Sbjct 315121 GTCGACTCCTTCTGAATGTTGTAGTCCGCCAGCGTGCGCCCGTCCTCCAGCTGCTTGCCG 315180 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| ||||||||||| || || || ||||||||||| || || || || Sbjct 315181 GCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTC 315240 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 ||| |||| ||||| ||| || || || | || | ||| ||||| ||||| || Sbjct 315241 ACCGTCTCGATCGTGTCGCCGCTGTCCACATCCAGCGTAATCGTCTTGCCCGTCAGGGTC 315300 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 315301 TTCACGAAGATCTGCAT 315317 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118541 TGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCC 118600 ||| ||||| || || |||||||| ||| | ||||| |||||| ||||| || || Sbjct 314062 TGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTGCC 314121 Query 118601 AGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTT 118660 ||| |||| ||||||||||| || || || ||||||||||| || || || || Sbjct 314122 GGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTT 314181 Query 118661 AACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 ||| |||| || || ||| || || || | || | ||| ||||| ||||| || Sbjct 314182 CACCGTCTCGATCGTATCGCCGCTGTCCACGTCCAGTGTAATCGTCTTGCCCGTCAGCGT 314241 Query 118721 TTTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 314242 CTTGACGAAGATCTGCAT 314259 Score = 93.3 bits (102), Expect = 4e-14 Identities = 90/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||| ||||| || || |||||||||||| || || || |||||| Sbjct 314513 ACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATCCTCC 314572 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 | ||| || || ||| |||| |||||||| ||||| ||||| || |||||||| || Sbjct 314573 AACTGCTTGCCGGCGAAGATCAGACGCTGTTGATCAGGAGGGATACCCTCCTTATC 314628 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| | ||||| |||||| ||||| || || Sbjct 314294 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCG 314353 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| |||||||| || || || || || ||||||||||| ||| || || Sbjct 314354 GCGAAGATCAGACGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTC 314413 Query 118662 ACCTGTTCGACGGTGT---CCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || ||||| |||| ||| | ||||| || | || | || || || ||||| Sbjct 314414 ACAGTTTCGATCGTGTCACCCGAG---TCGACGTCAAGCGTAATGGTCTTCCCTGTCAGC 314470 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || || || || |||||||| Sbjct 314471 GTCTTGACGAAGATCTGCAT 314490 >seq1 Length=1189627 Score = 100 bits (110), Expect = 2e-16 Identities = 143/200 (72%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || || |||||||| ||| | |||||| |||||||||||| || ||| Sbjct 523559 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCATCCTCGAGCTGCTTGCCA 523618 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| |||||||| || || ||||| || ||||||||||| || || || Sbjct 523619 GCGAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTTG 523678 Query 118662 ACCTGTTCGACGGTGT---CCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGA 118718 || |||| |||| ||| | ||||| |||| || | ||| || || ||||| Sbjct 523679 ACGGTCTCGATCGTGTCGCCCGAG---TCGACATCGAGCGTGATCGTCTTACCCGTCAGG 523735 Query 118719 GTTTTTACAAAAATCTGCAT 118738 || || || || |||||||| Sbjct 523736 GTCTTCACGAAGATCTGCAT 523755 >seq68 Length=472887 Score = 93.3 bits (102), Expect = 4e-14 Identities = 226/340 (66%), Gaps = 2/340 (1%) Strand=Plus/Minus Query 133016 CGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCCATGTTTATTATACACTTTGA 133075 |||||| ||| || ||||| | | || ||||||||||||| || | |||| Sbjct 104110 CGATTGCGACTGGTCAATGAAGGCGCCGCGATCGGCGGCCATGTCAATCAGCGACTTCTG 104051 Query 133076 TTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTT 133135 ||||||||||| | |||||| | || | ||||| || ||| || ||| ||||||||| Sbjct 104050 CTTGATCTCCCAAACGGTCTTGTACAGGTCCTTGAGATCCTGCGGGATTCGGTCAATGTT 103991 Query 133136 CTGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCGCAATTCCGGAGT-GTAAATGTCGA 133194 ||| || |||||||| | |||| | || || |||||| | || || | | | | Sbjct 103990 CTGGACCGACCCGTTGTGTGCCATCAGCTGGTGGCGCAAGT-CGTCGTCCCACAGGCCCC 103932 Query 133195 GATCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGC 133254 | | ||| || | | || | || ||||| || ||||| || || || || | Sbjct 103931 GGTTGATCAGGTCCACCAGCAGGTGCTTGTTGATGACGGTGAACTCACCAGCCAGCACAC 103872 Query 133255 GTCTGAGATATACATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCG 133314 |||| || | || |||| |||| ||||| | |||||||| || || ||||| Sbjct 103871 GTCTCGCGTAGATGTTGCTCGTGTACGGCTCGAAGCACTCGTTGTTCCCCAGGATCTGGC 103812 Query 133315 CCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTT 133354 || | ||| |||||||| ||| | || ||| || || Sbjct 103811 TGGTTGACGCTGTGGGCATCGGCGCGAGCAGCAACGAATT 103772 >seq83 Length=380421 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 47176 ATGTTACCCAGATCGCCTACGTGACGCTCGGCGGCGTTGGGAGCGCCGTGATTGCGGCCC 47235 ||||| || || ||||| ||||| ||||||| | || ||| ||||| || | ||| Sbjct 22497 ATGTTGCCAAGGTCGCCGACGTGCCGCTCGGTGTCGGCGGGCGCGCCATGCGTCTTGCCG 22438 Query 47236 AACGGATTATAGTGTTCGCCGGCCGACGTGCAGCCGTTGC-TCGTGTCGCCGAATTCGTG 47294 |||||||| ||||| |||||| ||| | ||| || |||| ||||||||||| || || Sbjct 22437 AACGGATTGTAGTGCCCGCCGGTCGATGCGCACCC-TTGCGTCGTGTCGCCGTGCTCATG 22379 Query 47295 CACGTGAAATCCGTG 47309 ||||| || ||||| Sbjct 22378 GACGTGGAAGCCGTG 22364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433829527594180