Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq112 136 5e-27 seq122 131 2e-25 >seq112 Length=800634 Score = 136 bits (150), Expect = 5e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| || | ||||| || |||||| ||||| ||||| || ||||| || ||| | Sbjct 315102 ACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAGCGTGCGCCC 315161 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || || || || || ||||||||||| | ||| | || |||||| Sbjct 315162 GTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 315221 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT-TCCACATCGACCGTGA 43146 ||| ||| || || | |||| | | |||||||| || | |||||||| | ||| | Sbjct 315222 ATCCTGGATCTTGGCCTTCACCGTCTCGATCGTGTCGC-CGCTGTCCACATCCAGCGTAA 315280 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || |||||||| || ||||| || ||||| ||||| Sbjct 315281 TCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 315317 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| || | ||||| ||| |||||| || || ||||| || || || || || | Sbjct 314044 ACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACC 314103 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| || || ||||||||||| | ||| | || |||||| Sbjct 314104 ATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTT 314163 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT-TCCACATCGACCGTGA 43146 ||| ||| || || | |||| | | ||| |||| || | ||||| || | || | Sbjct 314164 ATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATCGC-CGCTGTCCACGTCCAGTGTAA 314222 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || |||||||| |||||||| || ||||| ||||| Sbjct 314223 TCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 314259 >seq122 Length=778307 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || ||||| || || |||| || |||||||||||||| || Sbjct 341120 CTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCAAA 341179 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || ||||| ||||| | ||| | || |||||||||| ||| || |||| | Sbjct 341180 GATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGGC 341239 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||| ||| ||||||||| ||||| || ||||| || |||||||| || Sbjct 341240 CTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTGCCGGTAAGCGTCTTGAC 341299 Query 43172 AAAGATTTGCAT 43183 || |||||||| Sbjct 341300 GAATATTTGCAT 341311 Score = 118 bits (130), Expect = 1e-21 Identities = 149/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || ||| |||| || |||||||| || || || Sbjct 759256 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAA 759315 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||||||||| | ||| | || ||||||||| ||| | || | |||| | Sbjct 759316 GATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCC-TGAATCTTCGCCTTGACAG 759374 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | | ||||| | || || ||||| | |||||||| || || || |||||||| | Sbjct 759375 TCTCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGTCTTCCCAGTGAGCGTCTTCA 759434 Query 43171 CAAAGATTTGCATTTTTACGCC 43192 | ||||| ||||| || |||| Sbjct 759435 CGAAGATCTGCATCGTTCCGCC 759456 Score = 118 bits (130), Expect = 1e-21 Identities = 158/217 (73%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||||| |||| || ||| || || || ||||| || || || || || | Sbjct 759463 ACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGTCC 759522 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| || || ||||||||||||| ||| | | |||||| Sbjct 759523 ATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGAATACCCTCCTT 759582 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT-TCCACATCGACCGTGA 43146 |||| ||| || || | ||| | | |||||| | || | || || |||| ||| | Sbjct 759583 GTCCTGGATCTTGGCCTTCACGGTCTCGATCGTGTCAC-CGCTGTCGACGTCGAGCGTAA 759641 Query 43147 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| |||||||| || ||||| || ||||| ||||| Sbjct 759642 TGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 759678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816420626200