Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq122 123 2e-23 seq112 105 4e-18 seq1 102 5e-17 >seq122 Length=778307 Score = 123 bits (136), Expect = 2e-23 Identities = 171/233 (73%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 |||||| || || | |||||||||||| | ||| |||||||| ||||||||||||| Sbjct 759451 TCCGCCACGAAGACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGC 759510 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| || | || || | ||||||||| ||||| || || |||||||||||| || Sbjct 759511 AAGCGTGCGTCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGG 759570 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCG-GT---CGAT- 34336 | | ||||||||| ||||| ||| | ||| | ||| |||| || || | Sbjct 759571 AATACCCTCCTTGTCCTGGATCTTGGCCTTCA---CGG-TCTCG-ATCGTGTCACCGCTG 759625 Query 34337 TCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| | ||| ||||| ||||| || || || ||||| ||||||||||| Sbjct 759626 TCGACGTCGAGCGTAATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 759678 Score = 96.9 bits (106), Expect = 2e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| | ||| || |||| |||| |||||| || || || Sbjct 759257 TCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAG 759316 Query 34259 ATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || || ||||||||||| | |||| | || |||||||| ||||| ||| | | Sbjct 759317 ATCAGACGCTGCTGGTCTGGCGGG-ATGCCTTCCTTGTCCTGAATCTTCGCCTTGACAGT 759375 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || || ||||| |||| |||||||| || || ||||| || ||||| Sbjct 759376 CTCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGTCTTCCCAGTGAGCGTCTTCAC 759435 Query 34378 AAAGATCTGCATCGCTC 34394 ||||||||||||| || Sbjct 759436 GAAGATCTGCATCGTTC 759452 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||| |||| ||| |||| |||| |||||| || || || Sbjct 341121 TCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCAAAG 341180 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||| ||||| || | || ||||||||| ||||| ||| | | Sbjct 341181 ATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGGCC 341240 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | |||| || | ||| | || || | ||||| || |||||||| || || || || Sbjct 341241 TCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTGCCGGTAAGCGTCTTGACG 341300 Query 34379 AAGATCTGCATCG 34391 || || ||||||| Sbjct 341301 AATATTTGCATCG 341313 >seq112 Length=800634 Score = 105 bits (116), Expect = 4e-18 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| || || || | || || ||||| ||||||||||||| Sbjct 314860 CCACCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 314919 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| |||||| || |||||||| || ||||| || || || Sbjct 314920 AGGGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATCAGACGCTGTTGATCAGGAGGG 314979 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT--ATCGAATCGGTCGATTCGA 34340 | || ||||||||| ||| || ||||| || || || |||| ||| || |||| Sbjct 314980 ATGCCCTCCTTGTCCTGAATC-TTGGCTTT-GACCGTCTCGATCGTGTCGCCTGAGTCGA 315037 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 | |||| |||||||| ||||| || || || || || ||||||||||||| Sbjct 315038 CATCCAATGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCATCG 315088 Score = 104 bits (114), Expect = 2e-17 Identities = 190/266 (71%), Gaps = 13/266 (5%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| ||||| | ||| || || || | || || ||||| ||||||||||| | | Sbjct 315091 CCGCCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCC 315150 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 ||| || |||| |||| ||||||||| || || || || ||||||||||| | |||| Sbjct 315151 AGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGG 315210 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT--ATCGAATCGGTCGAT-TC 34338 | || |||||| || ||||| ||| | || || |||| || | || | || Sbjct 315211 -ATGCCCTCCTTATCCTGGATCTTGGCCTT--CACCGTCTCGATCGTGTC-GCCGCTGTC 315266 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTCGAAT 34398 || |||| ||| || || ||||| || || || ||||| ||||||||||||| || || Sbjct 315267 CACATCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCG-TC--AT 315323 Query 34399 GGTGCGTGCGCAGAGCGACAACACGC 34424 |||| | |||| | |||| || ||| Sbjct 315324 GGTG-GCTCGCA-ATCGACGACCCGC 315347 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| || || || || || || ||||| ||||||||||||| Sbjct 314264 CCACCACGCAGACGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 314323 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || | || |||| ||||||||| ||||| || || ||||| ||||| ||| Sbjct 314324 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGA 314383 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | |||| || ||| |||||| Sbjct 314384 ATACCCTCCTTGTCCTGAATCTTGGCCTTCACAGTTTCGATCGTGTCACCCGAGTCGACG 314443 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 || | ||| ||||| || || || || || || || ||||||||||||| Sbjct 314444 TCAAGCGTAATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCATCG 314492 Score = 95.1 bits (104), Expect = 8e-15 Identities = 165/233 (71%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||| || || || | || || ||||| ||||||||||||| Sbjct 314033 CCACCACGCAGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCG 314092 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281 || || | || |||| ||||||||| ||||| || || |||||||||| || |||| Sbjct 314093 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 314152 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCT--ATCGAATCGGTCGAT-TC 34338 | || |||||| || ||||| ||| | || || |||| ||| | || | || Sbjct 314153 -ATGCCCTCCTTATCCTGGATCTTGGCCTT--CACCGTCTCGATCGTATC-GCCGCTGTC 314208 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 ||||||| || || || ||||| || || || || || ||||||||||||| Sbjct 314209 CACGTCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATCG 314261 >seq1 Length=1189627 Score = 102 bits (112), Expect = 5e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || || ||||| || || || ||||| ||||||||||||| Sbjct 523529 CCACCACGCAGACGGAGGACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 523588 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 ||| || | || || | ||||||||| ||||| || || ||||| ||||| || Sbjct 523589 AGCGTGCGCCCATCCTCGAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCCGGAGGA 523648 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTA-GATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | || | |||| ||| ||| ||||| Sbjct 523649 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGGTC-TCGATCGTGTCGCCCGAGTCGAC 523707 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 || | |||||| || || || || || || ||||| ||||||||||||| Sbjct 523708 ATCGAGCGTGATCGTCTTACCCGTCAGGGTCTTCACGAAGATCTGCATCG 523757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071350322400