Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq68 143 6e-29 >seq68 Length=472887 Score = 143 bits (158), Expect = 6e-29 Identities = 615/958 (64%), Gaps = 48/958 (5%) Strand=Plus/Plus Query 248418 CATGTACATCACCAAGCGGGACGGGCGCAAAGAAAACGTTCTCTTCGACAAAATCTCGGC 248477 ||||||| | |||||| || || ||||| || | || | ||||||||| ||| || | Sbjct 101937 CATGTACGTTGTCAAGCGCGATGGCCGCAAGGAGCAGGTGCACTTCGACAAGATCACGTC 101996 Query 248478 GCGCATCAAGAAGCTCTGTTATGGTCT---GGAACCCAACTTCGTCGATCATGTGGCCAT 248534 |||||||||||||||||| ||||| || |||| | |||||||| | || | Sbjct 101997 GCGCATCAAGAAGCTCTGCTATGGCCTGTCGGAA---ACGTTCGTCGAGCCGGTCAAGGT 102053 Query 248535 CGCCCAGAAAGTTATTTCGGGCGTCTACACCGGAGTAACAACGACAGAACTGGACACCTT 248594 ||||||||| || | ||||||||| | || || || || || || || | Sbjct 102054 CGCCCAGAAGGTCGTCATGGGCGTCTATCCGGGCGTGACCACCGTCGAGCTCGATGAACT 102113 Query 248595 AGCTGCGGAGACGGCGGCGTACATGGCGATTGCA-CACCCCGACTACTCGCTGCTGGCCG 248653 || || |||| || || |||||| ||| ||| || ||||| ||| ||||||| || Sbjct 102114 CGCCGCACAGACCGCCGCCTACATGTCGA-CGCAGCATCCCGATTACGCGCTGCTCGCGT 102172 Query 248654 GGAGGATCGCCGTCTCAAGGCTTCACAAAGAAACGAAAGAGTCGTTCGTCGAAACC---- 248709 | ||| | ||||| | || ||||| | |||| | ||||||||||| ||| Sbjct 102173 CCCGCATCTCTGTCTCCAACCTGCACAAGCAGACGACGAAATCGTTCGTCGAGACCGCAC 102232 Query 248710 -ATGGCTG-------------ACC----TACATGCCT---ATGG--GATGGTCGCCGATG 248746 | | ||| ||| || |||| || | | || ||||||| | Sbjct 102233 GACGCCTGCACGACTGGGTCAACCCGAAGACGCGCCTGGAATCGCCGCTGATCGCCGACG 102292 Query 248747 ACGTCCACACCGTCATTCAGGACAACGCGCACCTCCTGGACGGCGCGATTGACTACGGCA 248806 ||||| |||| | | |||| | ||||| ||| | || ||||| Sbjct 102293 ACGTCTGGGAAATCATCGAAGCGAACGGCGAACTCCTCGACTCGTCCATCATCTACGATC 102352 Query 248807 AAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAA 248866 ||||| || | || | || | ||||| || ||||| ||||| || || || Sbjct 102353 GCGATTTCGACTTTGACTATTTCGGCTTCAAGACCCTGGAACGGTCGTACCTGCTGAAGG 102412 Query 248867 TTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTC 248926 | || |||||||||| || || ||||||||| ||||||| || || ||||| || | Sbjct 102413 TCGACGGCAAGATCGCCGAGCGCCCACAGCACATGCTGATGCGCGTCGCCGTCGGCATCC 102472 Query 248927 ACAAGGATGACATAGAGAGCGTGC-TCGAGACGTACACCGGAATGAGTGAACGCTGGATG 248985 ||||| || || | | ||| | || | ||||||| | ||| || ||| | Sbjct 102473 ACAAGTCGGATATCGCG-GCGGCCATCCAAACGTACAACCTCATGTCCGAGAAGTGGTTC 102531 Query 248986 ACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTGAGCTCGTGC 249045 || || || | ||||| | ||||||||||| || | | || || || ||| Sbjct 102532 ACGCACGCGTCCCCGACCATGTTCAACGCCGGCACGCCCGTCCCGCAAATGTCGTCCTGC 102591 Query 249046 TTTCTTCTTGCCATGCAAG-ACGACTCTGTCGACGGCATTTATGACACGCTTAAACAGAC 249104 || || | || | |||| ||||||| |||| ||||| || |||||||| | Sbjct 102592 TTCCTGGTGGCGCT-CAAGAACGACTCCATCGAGGGCATCTACGACACGCTGCGCGAATG 102650 Query 249105 GGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATCCGAGCGAA 249164 || | || || || | || ||||| || || || ||| |||| | || || | Sbjct 102651 CGCCATCATCTCCAAGTCGGCCGGCGGCATTGGCGTCCACGTGCACAACGTGCGCGCCAC 102710 Query 249165 GGGTTCGTACATCAAAGGTACAAATGG--GGTCAGTGATGGTATCGTACCCCTCCTTCG- 249221 || || ||||| ||||| || || ||| | || ||||| ||| | ||||| Sbjct 102711 CGGCTCCTACATTCGTGGTACGAACGGCACGTC--GAACGGCATCGTCCCCATGCTTCGC 102768 Query 249222 ATGCTTTGAGTCCACCGCCAGGTTCATCAACCAG---GCCGGGCGCCGAAAGGGGTCGTT 249278 || | | | ||| ||| | | | || ||||| | |||| || ||||| |||| Sbjct 102769 GTGTTCTCCG-ACACTGCCCGCTACGTCGACCAGGGCGGCGGGAAACGCAAGGGCGCGTT 102827 Query 249279 CGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAG 249336 |||| |||| ||||| ||||||||| || || || ||||||||||| |||||||| Sbjct 102828 CGCCGTGTACCTGGAACCGTGGCACGCGGACATCTTCGAGTTCCTGGAGCTGAAAAAG 102885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073764129990720