Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq112 141 7e-29 seq122 127 2e-24 seq1 116 3e-21 >seq112 Length=800634 Score = 141 bits (156), Expect = 7e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 |||||||| ||||||||||||||||||||| ||| ||| |||| ||||| || Sbjct 315115 TGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAGCGTGCGCCCGTCCTCCAGCTGC 315174 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || ||||| || |||| ||||| ||||| || || | |||||||| ||| || || Sbjct 315175 TTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGGATCTTG 315234 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| |||| | | | |||| || | ||||| |||| |||||||||||||||||| Sbjct 315235 GCCTTCACCGTCTCGATCGTGTCGCCGCTGTCCACATCCAGCGTAATCGTCTTGCCCGTC 315294 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || |||||||| ||||| ||||| Sbjct 315295 AGGGTCTTCACGAAGATCTGCAT 315317 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 ||||| || ||||||||| |||||||||||| || |||| | || ||||| || Sbjct 314057 TGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGC 314116 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| |||| ||||| ||||| || || | |||||||| ||| || || Sbjct 314117 TTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTG 314176 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| |||| | | | | || || | ||||| |||| |||||||||||||||||| Sbjct 314177 GCCTTCACCGTCTCGATCGTATCGCCGCTGTCCACGTCCAGTGTAATCGTCTTGCCCGTC 314236 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||| ||||| Sbjct 314237 AGCGTCTTGACGAAGATCTGCAT 314259 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 |||||||| ||||||||| |||||||||||| || |||| | || ||||| || Sbjct 314884 TGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGC 314943 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 ||||||||||| |||| |||||||| || ||||| | |||||||||||| ||| || Sbjct 314944 TTTCCGGCGAAAATCAGACGCTGTTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTG 315003 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 || |||| | | | |||| || || || |||| || || ||||||||||| Sbjct 315004 GCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGACATCCAATGTGATGGTCTTGCCCGTA 315063 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||| ||||| Sbjct 315064 AGCGTCTTGACGAAGATCTGCAT 315086 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45134 TGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGT 45193 |||| ||| ||||||||| |||||||||||| || |||| | || ||||| || Sbjct 314288 TGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGC 314347 Query 45194 TTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTT 45253 || |||||||| |||| ||||||||||| || || | ||||||||||||| ||| || Sbjct 314348 TTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTG 314407 Query 45254 TGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTC 45313 ||| || | | | |||| || || || || | ||||| ||||| || ||| Sbjct 314408 GCCTTCACAGTTTCGATCGTGTCACCCGAGTCGACGTCAAGCGTAATGGTCTTCCCTGTC 314467 Query 45314 AGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || ||||| ||||| Sbjct 314468 AGCGTCTTGACGAAGATCTGCAT 314490 >seq122 Length=778307 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| || ||| ||||| |||||||||||| || ||| | || || Sbjct 759470 ACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGTCCATCCTCG 759529 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || |||||||| |||| ||||| |||||||| || | ||||||||||||| Sbjct 759530 AGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGG 759589 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| || | || || || | ||||| |||||| Sbjct 759590 ATCTTGGCCTTCACGGTCTCGATCGTGTCACCGCTGTCGACGTCGAGCGTAATGGTCTTG 759649 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 |||||||| |||||||| ||||| |||||| Sbjct 759650 CCCGTCAGGGTCTTCACGAAGATCTGCATG 759679 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||||||| ||||||||| |||||||||||| ||| ||| |||| ||||| || Sbjct 341108 GTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTG 341167 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || |||| ||||||||||| || || | |||||||||||| || || Sbjct 341168 CTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTT 341227 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || ||| | | ||||| | |||| || | || ||||||||||| || Sbjct 341228 GGCCTTGACGGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTGCCGGT 341287 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || ||||| || || |||||||| Sbjct 341288 AAGCGTCTTGACGAATATTTGCAT 341311 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| ||||||||||| || ||| |||| ||||| || Sbjct 759244 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCCTCCAGCTG 759303 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || |||| ||||| ||||| || || | || ||||||||| ||| || Sbjct 759304 CTTCCCCGCAAAGATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGAATCTT 759363 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | | |||| ||| || || |||| || || ||||| || || Sbjct 759364 CGCCTTGACAGTCTCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGTCTTCCCAGT 759423 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || |||||||| ||||| ||||| Sbjct 759424 GAGCGTCTTCACGAAGATCTGCAT 759447 >seq1 Length=1189627 Score = 116 bits (128), Expect = 3e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||||| ||| ||||||||| |||||||||||| || ||| | || || || || Sbjct 523552 GTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCATCCTCGAGCTG 523611 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| |||| ||||||||||| ||||| | ||||||||||||| || || Sbjct 523612 CTTGCCAGCGAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTT 523671 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | |||| || || || || | || |||||||| ||||| Sbjct 523672 GGCCTTGACGGTCTCGATCGTGTCGCCCGAGTCGACATCGAGCGTGATCGTCTTACCCGT 523731 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||| |||||||| ||||| ||||| Sbjct 523732 CAGGGTCTTCACGAAGATCTGCAT 523755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395074405528465