Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq68 264 1e-65 seq112 105 6e-18 seq122 98.7 9e-16 seq1 91.5 1e-13 >seq68 Length=472887 Score = 264 bits (292), Expect = 1e-65 Identities = 397/558 (71%), Gaps = 12/558 (2%) Strand=Plus/Minus Query 23422 CTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAA 23481 |||||||| |||| || || || | |||||| |||||||| || ||||| ||||| || Sbjct 102885 CTTTTTCAGCTCCAGGAACTCGAAGATGTCCGCGTGCCACGGTTCCAGGTACACGGCGAA 102826 Query 23482 CGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCT 23541 ||||||| | || ||||||||| |||||||| ||||| |||| | | |||| | Sbjct 102825 CGCGCCCTTGCGTTTCCCGCCGCCCTGGTCGACGTAGCGGGCAGTGTCGGAGAACACGCG 102766 Query 23542 TAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGC-CCGCCACACTCGAA-CCTTTT 23599 ||||| || |||| ||||| |||| |||| | || || | | | | | || | Sbjct 102765 AAGCATGGGGACGATGCCGTTCGACGTGCCG--TTCGTACCACGAATGTAGGAGCCGGTG 102708 Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659 || || |||||||| ||||||| || ||||| ||| |||| || || || || |||||| Sbjct 102707 GCGCGCACGTTGTGCACGTGGACGCCAATGCCGCCGGCCGACTTGGAGATGATGGCGCAT 102648 Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACAC 23719 | ||| ||||||||||||||||||||| ||| | ||| ||| |||| ||| || Sbjct 102647 TCGCGCAGCGTGTCGTAGATGCCCTCGATGGAGTCGTTCTTGAGCGCCACCAGGAAGCAG 102588 Query 23720 GAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAG 23779 || |||||||||| |||||| |||| ||||| |||||| |||||||| || Sbjct 102587 GACGACATTTGCGGGACGGGCGTGCCGGCGTTGAACATGGTCGGGGACGCGTGCGTGAA- 102529 Query 23780 TATCCA-TTC---GACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTG 23835 ||| ||| ||||| || |||||||| | |||||| || | || ||| ||| Sbjct 102528 ---CCACTTCTCGGACATGAGGTTGTACGTTTGGATGGCCGCCGCGATATCCGACTTGTG 102472 Query 23836 TATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAAT 23895 || |||| |||||||||||||| ||||| || || | |||| | | ||||| | Sbjct 102471 GATGCCGACGGCGACGCGCATCAGCATGTGCTGTGGGCGCTCGGCGATCTTGCCGTCGAC 102412 Query 23896 TTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACG 23955 || | ||| || || |||| || || || || || ||||||||| ||| || || || Sbjct 102411 CTTCAGCAGGTACGACCGTTCCAGGGTCTTGAAGCCGAAATAGTCAAAGTCGAAATCGCG 102352 Query 23956 ATCGTGCACTATGGCCGA 23973 ||||| | |||| ||| Sbjct 102351 ATCGTAGATGATGGACGA 102334 Score = 206 bits (228), Expect = 2e-48 Identities = 856/1338 (64%), Gaps = 39/1338 (3%) Strand=Plus/Minus Query 22103 GTCTTG-TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACAT 22161 |||||| || || || |||| ||||||| |||| || | || || || ||||| Sbjct 104254 GTCTTGGTCAACGGTGAACTTGATGGCGTCGACGGCGGGCCGAGATCGCAGGTAGTACAT 104195 Query 22162 GCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACT 22221 ||||||||| || || | |||| ||||| ||||| |||||||||| || ||| | | Sbjct 104194 GCCCGTCTTGAGGCCTTTAGTCCAGGCGTAGAAATGCATCGACGTCAGCTTGCCAAAGTT 104135 Query 22222 CGGCAAGTC---CATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATC 22278 | ||| ||||| || |||||||| || ||| || || || || || ||||| Sbjct 104134 A---ATGTCGGTCATGTGGACGTTGAACGATTGCGACTGGTCAATGAAGGCGCCGCGATC 104078 Query 22279 GGCGGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCT 22338 ||||||||| | |||| | | | || ||||| |||||||||||||| | | | Sbjct 104077 GGCGGCCATGTCAATCAGCGACTTCTGCTTGATCTCCCAAACGGTCTTGTACAGGTCCTT 104018 Query 22339 GATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATT 22398 || || ||| || || || ||||||| |||||||| |||| |||| | Sbjct 104017 GAGATCCTGCGGGATTCGGTCAATGTTCTGGACCGACCCGTT---GTGTGCCATCAGCTG 103961 Query 22399 TTT-----AATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGG 22453 | | |||| ||| ||||| || | | ||| || | ||| || | Sbjct 103960 GTGGCGCAAGTCGT--CGTCCCACAGGCCCCGGTTGATCAGGTCCACCAGCAGGTGCTTG 103903 Query 22454 TTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGT 22513 || | || ||||| || | || || || | ||| |||||| ||| |||| Sbjct 103902 TTGATGACGGTGAACTCACCAGCCAGCACACGTCTCGCGTAGATGTTGCTCGTGTACGGC 103843 Query 22514 TCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAAC 22573 ||||| | || ||||| ||||| ||||| ||| || || || ||||||||||| | | Sbjct 103842 TCGAAGCACTCGTTGTTCCCCAGGATCTGGCTGGTTGACGCTGTGGGCATCGGCGCGAGC 103783 Query 22574 AGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCAC 22633 || | ||| || | || ||| ||| | || | ||| ||| ||||||||| Sbjct 103782 AGCAACGAATTCCGCATGCCATGCCGGGCGATATCGGCCTTCAGCGCGTCCCAGTCCCAT 103723 Query 22634 AGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGG 22693 | |||||| | ||||| |||||| ||| | || | | ||| | ||||||| Sbjct 103722 CGCGACGACGGCTTTACATT---CCACATGTCGAACTGGAGAATGCCCTGGGACGCCGGG 103666 Query 22694 CTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAAC 22753 ||||| | ||| ||||| || || | | |||| || || || | || Sbjct 103665 CTGCCAGGGAACGACTCGTAGGGGCCGTCCTTAACGGCCAGATC----CTTGGAGGCAGT 103610 Query 22754 GC--GCCGTAA--TATATAGTCTCGAAGATTTTCTTGTTCAATTCG-GCGGCGGCGACGC 22808 || |||| || || || ||||||||||| | ||||| | || ||| | || || Sbjct 103609 GCAGGCCGCAAAGTAGATCGTCTCGAAGATGTCGCGGTTCAGTGCGCGCGCCTCCGGCGA 103550 Query 22809 TTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGA 22868 | || |||| |||||| | ||| |||||||| | ||||| ||||| || |||| Sbjct 103549 GT-CGAACGGGTACCGCATCTGGATGAAGGCGTCCGCAAGGCCCTGGACGCCGATTCCGA 103491 Query 22869 TCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGA 22928 || | || | || ||||| || ||||||| ||| || | || |||| Sbjct 103490 CGGGCCTGTGTCGCATGTTCGATCGGCGCGCTTCGGGCACAGGGTAATAGTTGCCGTCGA 103431 Query 22929 TTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGT 22988 | |||||| ||| || ||| | | ||| | | |||||| Sbjct 103430 TCACCTTGTTCAGGTTCAGCGTTACAGTGTACGTCACGTCGTACAGCTTATGGAAGTCG- 103372 Query 22989 AAACGCC-CGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCC 23047 |||| || || || |||||| | |||||||| || || ||||| |||||| Sbjct 103371 -AACGTGGCGTCAGTG--ACGAACTTGGACAGTGCGATCGACGCCAGGTTGCAGACGGCC 103315 Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 |||||| ||||||||||| || ||||| || || || || || | ||| ||||| Sbjct 103314 GTCTCGTCCGCCGACGTGTACTCGACGATTTCCGTGCACAGGTTACTGCTCTTGATCGTC 103255 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||| || | ||||| | |||||||| | |||||| ||||| Sbjct 103254 CCCAGGTTCTTCTGGTTCGACTTGCTGTTGCAAGCGTCCTTGTACATCATGTAGGGCGTC 103195 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAG-CGTGAACACGTCG 23226 ||||| |||||||| | ||| | |||||| ||||| ||| | | ||| |||| Sbjct 103194 CCCGTTTCGACCTGGGCCTCCAGGATCGCGAACCACAGGTCCTGCGCCCTGA--TCGTCT 103137 Query 23227 CACG-TACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAAC 23285 ||| | || ||| || | ||| || || | ||| ||| | || ||| | || | Sbjct 103136 TACGTTGCCGGCCCTCGTTCTCATAGCGTTCGAACAGCGCAGCGAACTCGTCGCCCCAGA 103077 Query 23286 AGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAA 23345 ||| ||||| ||||||| | |||| || | | ||| | ||| | | Sbjct 103076 CGTCCGCCAGACCGGGCGCCTCGTTCGGGCAGAACAACGACCAGTGGGCGTCGGCCTGCA 103017 Query 23346 CGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCT 23405 | || ||| || ||||| || ||||| || |||| ||||| || || || || ||| Sbjct 103016 CACGCTGCATGAACAGATCGGGAATCCAAAGGCCGTAAAACAGGTCACGAGCACGTTCCT 102957 Query 23406 CCTCTTTGCCGGTGTTCT 23423 | || |||||| ||||| Sbjct 102956 CTTCCTTGCCGTGGTTCT 102939 >seq112 Length=800634 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA-ACCGTC 31251 ||||| || ||||| ||||| ||||| ||||| ||||| || | || || || | || | Sbjct 315317 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACGATTACGCTGGATGTGGACAGCGGC 315258 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| ||||| || | || ||| ||||| ||| | ||||| ||||| Sbjct 315257 -GACACGATCGAGACGGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCTGACCA 315199 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || || ||||| ||| |||| ||| || || || || || Sbjct 315198 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGGCGCACGCTGGCGGACTACAA 315139 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||| || || ||||| || ||||| || || | ||| | ||||||| Sbjct 315138 CATTCAGAAGGAGTCGACGCTGCATCTCGTCCTGCGTCTGCGTGGCGGTA 315089 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA-ACCGTC 31251 ||||| || ||||| ||||| ||||| ||||| ||||| || | ||||| || | || | Sbjct 314259 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACGATTACACTGGACGTGGACAGCGGC 314200 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| ||||| || | || ||| ||||| ||| | ||||| ||||| Sbjct 314199 -GATACGATCGAGACGGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCGGACCA 314141 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| ||||| ||| |||| || | || | ||| || || Sbjct 314140 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAA 314081 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||| || || || ||||| || ||||| || || | ||| | || ||| Sbjct 314080 CATCCAGAAGGAGTCGACACTGCATCTCGTCCTGCGTCTGCGTGGTGGT 314032 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||||||| || || || || | ||||| || || Sbjct 314855 ATGCAGATCTTCGTCAAGACGCTGACAGGAAAGACCATTACGCTTGACGTCGACTCGGGT 314796 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||||||| || | || |||||| || || | || || |||||| Sbjct 314795 GACACAATCGAAACGGTGAAGGCCAAGATTCAGGACAAAGAGGGTATTCCCCCGGACCAG 314736 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || ||||| ||||| ||| |||| || Sbjct 314735 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGA 314701 >seq122 Length=778307 Score = 98.7 bits (108), Expect = 9e-16 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGA-ACCGT 31250 |||||| || ||||| ||||| ||||| ||||| || || || ||||||| || | || Sbjct 759679 CATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATTACGCTCGACGTCGACAGCGG 759620 Query 31251 CCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| |||| || || || | || ||||||||| || | |||||||||| Sbjct 759619 T-GACACGATCGAGACCGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCGCCCGACC 759561 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTAT 31369 ||||||| || || ||||| ||||| ||| | || || | | | || | ||| || Sbjct 759560 AGCAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGA-TGGACGCACGCTTGCCGACTAC 759502 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || ||||| |||||||| || ||||| || Sbjct 759501 AACATCCAGAAAGAGTCGACTCTGCACCTGGTGCT 759467 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || || || ||||| | || || || | Sbjct 759447 ATGCAGATCTTCGTGAAGACGCTCACTGGGAAGACCATCACTCTGGATGTCGATTCTGGT 759388 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| || ||||| || || ||||||||||||| | ||||| |||||| Sbjct 759387 GACACCATCGAGACTGTCAAGGCGAAGATTCAGGACAAGGAAGGCATCCCGCCAGACCAG 759328 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC 31348 |||||||| || || || || || ||| |||| ||| Sbjct 759327 CAGCGTCTGATCTTTGCGGGGAAGCAGCTGGAGGAC 759292 >seq1 Length=1189627 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || |||||||| |||| || || || | Sbjct 523755 ATGCAGATCTTCGTGAAGACCCTGACGGGTAAGACGATCACGCTCGATGTCGACTCGGGC 523696 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| || ||||| | || ||||||||| || | || || ||||| Sbjct 523695 GACACGATCGAGACCGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAA 523636 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || ||||||||||| ||| | || || Sbjct 523635 CAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGA 523601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765480606800