Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq68 102 8e-17 seq122 98.7 1e-15 >seq68 Length=472887 Score = 102 bits (112), Expect = 8e-17 Identities = 110/143 (77%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 152763 TAGTACATGCCCGTCTTGAGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTA 152822 ||||||||||||||||||||||| |||| |||| | |||| ||||| || ||| Sbjct 104202 TAGTACATGCCCGTCTTGAGGCCTTTAGTCCAGGCGTAGAAATGCATCGACGTCAGCTT- 104144 Query 152823 GCCAAAG-TAGGGTCGGCCATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCC 152881 ||||||| || ||||| ||||| ||||| |||||||| || ||||| || ||||| Sbjct 104143 GCCAAAGTTAATGTCGGTCATGTGGACGTTGAACGATTGCGACTGGTCAATGAAGGCGCC 104084 Query 152882 TCTATCTGCTGCCATGTCGATCA 152904 | ||| || |||||||| |||| Sbjct 104083 GCGATCGGCGGCCATGTCAATCA 104061 >seq122 Length=778307 Score = 98.7 bits (108), Expect = 1e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 139561 GTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTG 139620 ||| | ||| ||||| || || ||||| || ||| || |||| ||| || ||||| Sbjct 341108 GTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTG 341167 Query 139621 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 ||||||||| |||||||||| || || || || || ||||| || ||||| ||| || Sbjct 341168 CTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTT 341227 Query 139681 TTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGT 139740 || | || | ||||| | | | |||| || | || | |||||||||||| Sbjct 341228 GGCCTTGACGGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTGCCGGT 341287 Query 139741 CAACGTTTTTACGAATATTTGCAT 139764 | ||| || |||||||||||||| Sbjct 341288 AAGCGTCTTGACGAATATTTGCAT 341311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496062976868000