Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq68 140 5e-28 >seq68 Length=472887 Score = 140 bits (154), Expect = 5e-28 Identities = 278/407 (68%), Gaps = 6/407 (1%) Strand=Plus/Plus Query 96975 GAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAG 97034 ||||||| ||| || | ||| ||||||| | || ||| | || ||| |||||||| || Sbjct 102953 GAAGAGGAACGTGCTCGTGACCTGTTTTACGGCCTTTGGATTCCCGATCTGTTCATGCAG 103012 Query 97035 CGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCC 97094 || || | | || | | ||||| | | ||||| || | | ||||||||| | Sbjct 103013 CGTGTGCAGGCCGACGCCCACTGGTCGTTGTTCTGCCCGAACGAGGCGCCCGGTCTGGCG 103072 Query 97095 GATTGCTGGGGCGAAGAGTTTGAGGCCAAGTAC--ACGGCCTACGAGCAAGAGGGCCGAT 97152 || ||||||||| ||||| | || || | ||| ||| ||| | |||||||| Sbjct 103073 GACGTCTGGGGCGACGAGTTCGCTGCGCTGTTCGAACG--CTATGAGAACGAGGGCCGGC 103130 Query 97153 A-CGTGAGACGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAG 97211 | ||| |||||| || || | || |||||| || ||| || ||| ||||| || Sbjct 103131 AACGTAAGACGA-TCAGGGCGCAGGACCTGTGGTTCGCGATCCTGGAGGCCCAGGTCGAA 103189 Query 97212 ACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCAC 97271 || || || || ||||| | |||||||| | || |||| ||||| || Sbjct 103190 ACGGGGACGCCCTACATGATGTACAAGGACGCTTGCAACAGCAAGTCGAACCAGAAGAAC 103249 Query 97272 TTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGAC 97331 |||| || |||||| || || |||||||||||||| || |||||| | || ||||| Sbjct 103250 CTGGGGACGATCAAGAGCAGTAACCTGTGCACGGAAATCGTCGAGTACACGTCGGCGGAC 103309 Query 97332 GAGACGGCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGT 97378 |||||||| || ||| ||||| ||| || ||| ||||||| || Sbjct 103310 GAGACGGCCGTCTGCAACCTGGCGTCGATCGCACTGTCCAAGTTCGT 103356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741057671565400