Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq83 89.7 4e-13 >seq83 Length=380421 Score = 89.7 bits (98), Expect = 4e-13 Identities = 114/152 (75%), Gaps = 4/152 (3%) Strand=Plus/Minus Query 21138 GACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGTGATTTTGGTG 21197 || |||||| || ||||||||||||||||| | | || |||| ||||| || | | | Sbjct 22498 GATGTTGCCAAGGTCGCCGACGTGCCGCTCGGTGTCGGCGGGCGCGCCATGCGTCTTG-C 22440 Query 21198 CGTA-GGGTTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGC-TGGTGTCGCCGAACTCG 21255 || | || || ||||| |||||| || | ||| || |||| | ||||||||| ||| Sbjct 22439 CGAACGGATTGTAGTGCCCGCCGGTCGATGCGCA-CCCTTGCGTCGTGTCGCCGTGCTCA 22381 Query 21256 TGAACGTGAAAGCCGTGCAGTCCGCGCGGCAG 21287 || ||||| ||||||||| | ||| ||| ||| Sbjct 22380 TGGACGTGGAAGCCGTGCTGGCCGGGCGTCAG 22349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414571966320010