Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq112 122 2e-22 seq122 105 2e-17 >seq112 Length=800634 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || || ||||| || || ||||| | || || | ||| || Sbjct 314875 AGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCC 314934 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || ||||| || ||||| || | ||||||||||||||| || || || || ||| Sbjct 314935 TCCAGCTGCTTTCCGGCGAAAATCAGACGCTGTTGATCAGGAGGGATGCCCTCCTTGTCC 314994 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| ||||| || | || | || |||| | || || || | ||| || ||| Sbjct 314995 TGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGACATCCAATGTGATGGTC 315054 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| || || || || |||||||| Sbjct 315055 TTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 315086 Score = 104 bits (114), Expect = 5e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| || || || || ||||| || || ||||| | || || | ||| || Sbjct 314279 AGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCC 314338 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || || || || || || | |||||| || || || || || || || ||| Sbjct 314339 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATACCCTCCTTGTCC 314398 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 |||||||| || || ||| |||| | || || | | || || || || ||||| ||| Sbjct 314399 TGAATCTTGGCCTTCACAGTTTCGATCGTGTCACCCGAGTCGACGTCAAGCGTAATGGTC 314458 Query 104528 TTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || || || || || || |||||||| Sbjct 314459 TTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 314490 >seq122 Length=778307 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||| | || || | ||||| Sbjct 759235 AAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTC 759294 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || ||||| || || | ||| || || || || || ||||| || || Sbjct 759295 CTCCAGCTGCTTCCCCGCAAAGATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTGTC 759354 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || ||| | || | ||| || | || || || || || || || || Sbjct 759355 CTGAATCTTCGCCTTGACAGTCTCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGT 759414 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| ||||| || || || || || |||||||| Sbjct 759415 CTTCCCAGTGAGCGTCTTCACGAAGATCTGCAT 759447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151395965871820