Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq83 123 4e-24 seq133 122 1e-23 >seq83 Length=380421 Score = 123 bits (136), Expect = 4e-24 Identities = 172/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| || || | |||||||| || | || ||||| || || Sbjct 69555 CGCCAAGCGCCATCGCAAGGTGCTGCGCAACAACATCCAGGGCGTGACGAAGCCGGCGAT 69496 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||||||||| || || || || |||||||| |||| || ||||||| || |||| Sbjct 69495 CCGTCGTCTGGCGCGCCGCGGCGGCGTCAAGCGCATCTCCGGGCTGGTCTACGAGGAGAC 69436 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || ||||| | ||||| ||| ||| |||| || | || ||| || || Sbjct 69435 GCGCGGCGTCCTGAAGGTGTTCCTGGAGAACGTCATCCGCGACTCGGTCACCTACACGGA 69376 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | || ||||| |||||| | | || ||||||| || ||||||| || || Sbjct 69375 GCACGCCAGGCGCAAGACGGTCACCGCTCTCGACGTCGTCTACGCCCTGAAACGCCAGGG 69316 Query 16672 C 16672 | Sbjct 69315 C 69315 >seq133 Length=764586 Score = 122 bits (134), Expect = 1e-23 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| || |||| || || | |||||||| || | || ||||| || ||| Sbjct 646729 GCTAAGCGCCACCGCAAGGTGCTCCGCAACAACATCCAGGGCGTGACGAAGCCGGCGATC 646788 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||| ||||||||||| ||||||||| |||| || | ||||| || |||| Sbjct 646789 CGTCGCCTGGCGCGTCGTGGTGGCGTCAAGCGTATCTCGGGTCTCGTCTACGAGGAGACG 646848 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| |||||||| ||| ||| |||| ||| | | || || ||| Sbjct 646849 CGAGGTGTCCTGAAGGTCTTCCTCGAGAACGTGATCCGTGACTCGGTGACGTACACGGAG 646908 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| || || | | || |||| || || | || ||||| ||| Sbjct 646909 CACGCTCGCCGCAAGACCGTGACTGCGCTCGACGTCGTGTACGCTCTCAAGCGTCAGGGC 646968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075049139345