Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq68 237 4e-57 >seq68 Length=472887 Score = 237 bits (262), Expect = 4e-57 Identities = 808/1253 (64%), Gaps = 37/1253 (3%) Strand=Plus/Plus Query 363903 AAACACGGGAA--AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCT 363960 || ||||| || |||||||| ||||| ||||| ||||| || | |||||| || | Sbjct 102941 AACCACGGCAAGGAAGAGGAA---CGTGCTCGTGACCTGTTTTACGGCCTTTGGATTCCC 102997 Query 363961 GACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAA 364020 || | || ||| |||| ||| |||| | | ||||| | || ||||| |||| Sbjct 102998 GATCTGTTCATGCAGCGTGTGCAGGCCGACGCCCACTGGTCGTTGTTCTGCCCGAACGAG 103057 Query 364021 TGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAA 364080 || ||||| | || || ||||| ||||| | | ||| || | |||| ||||| Sbjct 103058 GCGCCCGGTCTGGCGGACGTCTGGGGCGACGAGTTCGCTGCGCTGTTCGAACGCTATGAG 103117 Query 364081 TCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGAT 364140 ||||| | |||||||| || || ||| | || ||||| || ||| |||| Sbjct 103118 AACGAGGGCCGGCAACGTAAGACGATCAGGGCGCAGGACCTGTGGTTCGCGATCCTGGAG 103177 Query 364141 TCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCC 364200 | ||| | || || || || ||||| ||| ||||||| || | |||||| ||||||| Sbjct 103178 GCCCAGGTCGAAACGGGGACGCCCTACATGATGTACAAGGACGCTTGCAACAGCAAGTCG 103237 Query 364201 AACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATAC 364260 |||||| || |||| || || || || || ||||| || || || || | || ||| Sbjct 103238 AACCAGAAGAACCTGGGGACGATCAAGAGCAGTAACCTGTGCACGGAAATCGTCGAGTAC 103297 Query 364261 ACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTA 364320 || | | |||||||| ||||| || ||||| ||||||||||| || | ||| || Sbjct 103298 ACGTCGGCGGACGAGACGGCCGTCTGCAACCTGGCGTCGATCGCACTGTCCAAGTTCGTC 103357 Query 364321 AAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAAT 364380 | || | || || ||| ||| | || || ||||| || || || || || Sbjct 103358 ACTGACGCCACGTTCGACTTCCATAAGCTGTACGACGTGACGTACACTGTAACGCTGAAC 103417 Query 364381 CTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATG 364440 || ||||||| |||||| || ||||| || | || ||||| || || || ||| Sbjct 103418 CTGAACAAGGTGATCGACGGCAACTATTACCCTGTGCCCGAAGCGCGCCGATCGAACATG 103477 Query 364441 CGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTAT---GATGCTC 364497 || || | || | || | || || |||||||| || |||| || || ||||| Sbjct 103478 CGACACAGGCCCGTCGGAATCGGCGTCCAGGGCCTTGCGGACGCCTTCATCCAGATGC-- 103535 Query 364498 AAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATG 364557 | | || || ||||| || || || | || || || ||||| || || || Sbjct 103536 -GGTACCCGTTCGACTCGCCGGAGGCGCGCGCACTGAACCGCGACATCTTCGAGACGATC 103594 Query 364558 TATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACT 364617 || ||||| || ||||| || ||| |||| | ||| || | Sbjct 103595 TACTTTGCGGCCTGCACTGCCTCCAAGGATCTGGC---------CGTTAAGGACGGCCCC 103645 Query 364618 TATGAGGGGTCCCCT---------CTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAAT 364668 || ||| || |||| || ||||| | ||||||| || | |||||| Sbjct 103646 TACGAGTCGTTCCCTGGCAGCCCGGCGTCCCAGGGCATTCTCCAGTTCGACATGTGGAAT 103705 Query 364669 GTCACGCCATCTGTC-CGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGG 364727 || | ||| || ||| |||||| ||||||| |||| || | | |||||| Sbjct 103706 GTAAAGCCGTC-GTCGCGATGGGACTGGGACGCGCTGAAGGCCGATATCGCCCGGCATGG 103764 Query 364728 TACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGG 364787 | || || || | | ||||| |||||||| || || || |||||||| || Sbjct 103765 CATGCGGAATTCGTTGCTGCTCGCGCCGATGCCCACAGCGTCAACCAGCCAGATCCTGGG 103824 Query 364788 AAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGG 364847 ||||||||||||||||| |||| || ||||| | || | | || || || | || Sbjct 103825 GAACAACGAGTGCTTCGAGCCGTACACGAGCAACATCTACGCGAGACGTGTGCTGGCTGG 103884 Query 364848 AGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGG 364907 || || | || | || ||| |||| | ||| || | |||| || ||||||| Sbjct 103885 TGAGTTCACCGTCATCAACAAGCACCTGCTGGTGGACCTGATCAACCGGGGCCTGTGGGA 103944 Query 364908 TGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATT 364967 ||| | || || | | || || || || || || ||||||||| || | Sbjct 103945 CGACGACTTGCGCCACCAGCTGATGGCACACAACGGGTCGGTCCAGAACATTGACCGAAT 104004 Query 364968 TCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGC-GAA--CTCT 365024 || | ||||| ||| | ||||| ||||| ||||| || || || ||| | || Sbjct 104005 CCCGCAGGATCTCAAGGACCTGTACAAGACCGTTTGGGAGAT---CAAGCAGAAGTCGCT 104061 Query 365025 CATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATT 365084 ||||| ||||| ||||||||||| || || || ||| || ||||| ||||| Sbjct 104062 GATTGACATGGCCGCCGATCGCGGCGCCTTCATTGACCAGTCGCAATCGTTCAACGTCCA 104121 Query 365085 CATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGA 365137 |||||| | | || | |||||| || || ||||||||||||| |||| Sbjct 104122 CATGACCGACATTAACTTTGGCAAGCTGACGTCGATGCATTTCTACGCCTGGA 104174 Score = 114 bits (126), Expect = 3e-20 Identities = 306/461 (66%), Gaps = 9/461 (2%) Strand=Plus/Plus Query 363448 GAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGAT 363507 || ||||| ||||| ||| | ||||| || || | || ||||| ||||| | | Sbjct 102430 GAGCGCCCACAGCACATGCTGATGCGCGTCGCCGTCGGCATCCACAAGTCGGATATCGCG 102489 Query 363508 GCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGT-GTA-TTCACGCACGCCACGCCAA 363565 || || || |||| || || || | || | | || ||||||||||| | || | Sbjct 102490 GCGGCCATCCAAACGTACAACCTCAT--GTCCGAGAAGTGGTTCACGCACGCGTCCCCGA 102547 Query 363566 CAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGA 363625 | |||| ||| || || || | || || ||||| || ||||| || | | | Sbjct 102548 CCATGTTCAACGCCGGCACGCCCGTCCCGCAAATGTCGTCCTGCTTCCTGGTGGCGCTCA 102607 Query 363626 AGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGA 363685 || |||| ||||||||||| |||| ||||| || | || || | || |||||| Sbjct 102608 AGAACGACTCCATCGAGGGCATCTACGACACGCTGCGCGAATGCGCCATCATCTCCAAGT 102667 Query 363686 ATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACATTCGC 363744 || ||||| ||||| || | ||||| || || || || | | |||||||| Sbjct 102668 CGGCCGGCGGCATTGGCGTCCACGTGCACAACGTGCGCGCCACCGG-CTCCTACATTCGT 102726 Query 363745 GGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCG 363804 || || || ||||| || | || ||||||||||| ||||| | | ||||| Sbjct 102727 GGTACGAACGGCACGTCGAACGGCATCGTCCCCATGCTTCGCGTGTTCTCCGACACTGCC 102786 Query 363805 AGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCT 363864 | |||||||||||||| || || || ||||| || ||||| || |||| || || || Sbjct 102787 CGCTACGTCGACCAGGGCGGCGGGAAACGCAAGGGCGCGTTCGCCGTGTACCTGGAACCG 102846 Query 363865 CATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 || || || || || ||||| || ||||| |||||| Sbjct 102847 TGGCACGCGGACATCTTCGAGTTCCTGGAGCT---GAAAAA 102884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303350844629030