Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq112 105 5e-18 seq122 93.3 3e-14 >seq112 Length=800634 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||||||||| |||||||| || |||||||||||||| Sbjct 314860 CCACCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 314919 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| || || || || |||| || |||||||| || ||| Sbjct 314920 AGGGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATCAGACGCTGTTGATCAGGAGGG 314979 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || ||| || ||| | | |||||||| | || Sbjct 314980 ATGCCCTCCTTGTCCTGAATCTTGGCT--TTGACCGTCTCGATCGTGTCGCCTGAGTCGA 315037 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||||| || || || ||||| ||||| || |||||||| Sbjct 315038 CATCCAATGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 315086 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | |||||| || |||||||| || |||||||||||||| Sbjct 314033 CCACCACGCAGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCG 314092 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| || ||||| || | || || ||||| |||||| || Sbjct 314093 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 314152 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| || || || || || ||||||| | | || |||||| ||| Sbjct 314153 ATGCCCTCCTTATCCTGGATCTTGGC--CTTCACCGTCTCGATCGTATCGCCGCTGTCCA 314210 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || || |||||||| ||||| || |||||||| Sbjct 314211 CGTCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 314259 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||||||||| |||||||| || ||||||||||| ||| Sbjct 315091 CCGCCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCC 315150 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||||| || ||||| ||| | || || ||||| ||||| || Sbjct 315151 AGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGG 315210 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| || || || || || ||||||| | | ||||||||| ||| Sbjct 315211 ATGCCCTCCTTATCCTGGATCTTGGC--CTTCACCGTCTCGATCGTGTCGCCGCTGTCCA 315268 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || || || || || ||||| || || || || |||||||| Sbjct 315269 CATCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 315317 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | ||||| ||| |||||||| || |||||||||||||| Sbjct 314264 CCACCACGCAGACGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 314323 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| || ||||| || | || || |||||||||||| || Sbjct 314324 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGA 314383 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||| | |||||| | | ||||| || | || Sbjct 314384 ATACCCTCCTTGTCCTGAATCTTGGCCTTCACAGTTTCGATCGTGTCACCCGAGTCGACG 314443 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | || ||||| || || |||||||| ||||| || |||||||| Sbjct 314444 TCAAGCGTAATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 314490 >seq122 Length=778307 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/207 (71%), Gaps = 8/207 (4%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 |||||||| |||||||| || |||||||||||||||| || | ||||||||| || Sbjct 341109 TGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGC 341168 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || ||| | || || |||||||||||| || | |||||| ||||| || || Sbjct 341169 TTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTG 341228 Query 16851 GCTGCTTCACCTGGC--CCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCC 16908 || ||| || ||| | | ||||| | | || || | ||||| || || || Sbjct 341229 GC--CTTGAC--GGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTGCC 341284 Query 16909 GGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| ||||| ||||| || || ||||| Sbjct 341285 GGTAAGCGTCTTGACGAATATTTGCAT 341311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405087185393350