Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq99 89.7 6e-13 >seq99 Length=174244 Score = 89.7 bits (98), Expect = 6e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 137928 CGACTGCGGCACGTGAATGTTCATCTCGTCGCCGTCAAAGTCGCAGTTGAAGGGCTTCGT 137987 ||||||||||||||| | ||||||||||||||||||||||||| ||| | ||| ||| Sbjct 47694 CGACTGCGGCACGTGCAGGTTCATCTCGTCGCCGTCAAAGTCGGCATTGTACGGCGACGT 47635 Query 137988 TATGGCCAGGTTGATTTTGAGCGTCTTGACTGGTTTGATGACCACCTTAAAGGCCATCAT 138047 | ||||| | || |||| | || ||||| |||||| |||| || Sbjct 47634 CACACTGAGGTTAAGACGGAACGTCGAGTACGGCATGATGCGCACCTTGTGACCCATGAT 47575 Query 138048 GGACGCCTTGTGCAGCGTCGGTTGCCGGTTGAGCAGCACGTAGTCGCCGTCCATCAGCTG 138107 | | |||||||| || ||| || || |||| ||| ||| |||||||| | | || Sbjct 47574 GCTCATCTTGTGCAACGACGGCTGACGATTGAACAGGACGACATCGCCGTCGTTGATATG 47515 Query 138108 CCGTTTAATGACGTCGCCAACCTCAAG 138134 ||||| | ||||| || | ||| || Sbjct 47514 CCGTTCGACGACGTATCCCATCTCCAG 47488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611390739004000