Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq122 118 9e-22 seq112 100 2e-16 seq1 93.3 4e-14 >seq122 Length=778307 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||||||||| || ||||| | ||||| || | |||||| |||| |||| |||||| Sbjct 341311 ATGCAAATATTCGTCAAGACGCTTACCGGCAAGACGATCACACTCGATGTGGCGTCGTCG 341252 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| | | ||| || ||| ||||| || || ||||| || |||||| Sbjct 341251 GACACGATCGAGGCCGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAA 341192 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || || | || || | ||||| ||| ||| ||||| Sbjct 341191 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGCACGCTGGCCGACTACAAC 341132 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || ||||| || Sbjct 341131 ATCCAGAAGGAGTCGACGCTGCA 341109 >seq112 Length=800634 Score = 100 bits (110), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 24993 GGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAG 25052 || || ||||| || || || ||||| |||| || || |||| || | || || || Sbjct 314496 GGTACGATGCAGATCTTCGTCAAGACGCTGACAGGGAAGACCATTACGCTTGACGTCGAC 314437 Query 25053 TCGTCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 ||| |||||| ||||| | ||||| | || | ||| ||||| || || ||||| || Sbjct 314436 TCGGGTGACACGATCGAAACTGTGAAGGCCAAGATTCAG-GACAAGGAGGGTATTCCCCC 314378 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 ||||||||||| | || || |||||||| || | || |||| |||||| | | ||| Sbjct 314377 GGACCAACAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCCGA 314318 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || || || || || ||| | ||| | || || Sbjct 314317 CTACAACATCCAGAAGGAGTCGACGTTGCATCTCGTTCT 314279 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT-C 25054 || ||||| || || || ||||| |||| || || | || || | || ||||| | Sbjct 315320 ACGATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACGATTACGCTGGATGTGGACAGC 315261 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 | | ||||| |||||| | ||||| || ||| || || || || || || ||||| Sbjct 315260 GGC-GACACGATCGAGACGGTGAAGGCCAAGATCCAGGATAAGGAGGGCATCCCGCCTGA 315202 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || ||||||||||| || | || || | ||||| ||| || || Sbjct 315201 CCAGCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGGCGCACGCTGGCGGACTA 315142 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||| || || || ||||| ||| | || || Sbjct 315141 CAACATTCAGAAGGAGTCGACGCTGCATCTCGTCCT 315106 >seq1 Length=1189627 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || || || ||||| |||| ||||| | ||||| |||| || || ||| Sbjct 523758 ACGATGCAGATCTTCGTGAAGACCCTGACGGGTAAGACGATCACGCTCGATGTCGACTCG 523699 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||||| |||||| | | ||| || ||| ||||| || || ||||| || ||| Sbjct 523698 GGCGACACGATCGAGACCGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGAC 523639 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 |||||||| | || || || ||||| || | || |||| ||||| | | ||| ||| Sbjct 523638 CAACAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGGCGCACGCTCGCCGACTAC 523579 Query 25176 AATATTCAAAAAGAATCCACG 25196 || || || || || || ||| Sbjct 523578 AACATCCAGAAGGAGTCGACG 523558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327128604475