Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq112 111 1e-19 seq68 98.7 8e-16 seq122 91.5 1e-13 seq1 91.5 1e-13 >seq112 Length=800634 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||||||||| || || ||||| ||||| || || |||||||| Sbjct 314406 AAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAACAGCGTCTGATCTTCGCCGGCAAG 314347 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| |||||| || |||| |||||||| || || || || || | ||| Sbjct 314346 CAGCTGGAGGATGGTCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCGACGTTGCAT 314287 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 | ||| |||| |||| || ||| Sbjct 314286 CTCGTTCTGCGTCTGCGTGGTGGT 314263 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| || ||||||||||| || || |||||||| ||||| || || |||||||| Sbjct 314637 AAGATTCAGGATAAGGAGGGTATCCCTCCTGATCAACAGCGTCTGATCTTCGCCGGCAAG 314578 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||||| |||||| ||| ||| | ||||||||||||| || || || || || | || Sbjct 314577 CAGTTGGAGGATGGCCGAACCTTGGCCGATTACAACATCCAGAAGGAGTCGACACTTCAC 314518 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || |||| |||| || ||| Sbjct 314517 TTGGTCCTGCGTCTGCGTGGTGGT 314494 Score = 98.7 bits (108), Expect = 8e-16 Identities = 113/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 22295 TCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTG 22354 ||||| || ||||| ||||||||||| || || || |||||||| ||||| || || | Sbjct 315010 TCAAAGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAACAGCGTCTGATTTTCG 314951 Query 22355 CCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCA 22414 |||| || ||| | |||||| |||||| || |||| |||||||| || || || || | Sbjct 314950 CCGGAAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCGA 314891 Query 22415 CCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 | | ||| | || |||| |||| || ||| Sbjct 314890 CGCTGCATCTCGTCCTGCGTCTGCGTGGTGGT 314859 >seq68 Length=472887 Score = 98.7 bits (108), Expect = 8e-16 Identities = 183/267 (69%), Gaps = 9/267 (3%) Strand=Plus/Minus Query 130098 TTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGC 130157 |||||| || ||||| ||| | ||||| |||||||||||||| | || | || | || Sbjct 102882 TTTCAGCTCCAGGAACTCGAAGATGTCCGCGTGCCACGGTTCCAGGTACACGGCGAACGC 102823 Query 130158 GCCCTTCCGTTT---GCCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAG---ACTCG 130211 |||||| ||||| ||| || ||||| |||| ||| |||| ||| | || || || Sbjct 102822 GCCCTTGCGTTTCCCGCCGCCCTGGTCGACGTAGCG---GGCAGTGTCGGAGAACACGCG 102766 Query 130212 CAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGC 130271 | ||| | | | ||||| | ||||||||| || | |||| | ||| || Sbjct 102765 AAGCATGGGGACGATGCCGTTCGACGTGCCGTTCGTACCACGAATGTAGGAGCCGGTGGC 102706 Query 130272 CCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATC 130331 || ||||| || ||| | || ||||||||| | | || || || | ||||| || Sbjct 102705 GCGCACGTTGTGCACGTGGACGCCAATGCCGCCGGCCGACTTGGAGATGATGGCGCATTC 102646 Query 130332 GCGTAGCGTTTCATAAATGCCAACGAT 130358 ||| ||||| || || ||||| |||| Sbjct 102645 GCGCAGCGTGTCGTAGATGCCCTCGAT 102619 Score = 98.7 bits (108), Expect = 8e-16 Identities = 120/160 (75%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 129697 ATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTC-AC-TGTACTCGACAATTTCGG 129754 ||||| |||| ||||||||||| | |||| | | || |||||||||| ||||| | Sbjct 103338 ATCGACGCCAGGTTGCAGACGGCCGTCTCGTCC--GCCGACGTGTACTCGACGATTTCCG 103281 Query 129755 CGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAG 129814 ||||| ||||| | || || || |||| | ||| || || || ||||||||| Sbjct 103280 TGCACAGGTTACTGCTCTTGATCGTCCCCAGGTTCTTCTGGTTCGACTTGCTGTTGCAAG 103221 Query 129815 CATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTG 129854 | || |||||||||||||| ||||| ||||||||||| || Sbjct 103220 CGTCCTTGTACATCATGTAGGGCGTCCCCGTTTCGACCTG 103181 Score = 82.4 bits (90), Expect = 6e-11 Identities = 203/308 (66%), Gaps = 0/308 (0%) Strand=Plus/Minus Query 128929 TGATCAATAAAGGGGCCGCGATCGGCAGCCATACCAATCAAATTTTTCACTTTCATTTCC 128988 || ||||| |||| |||||||||||| ||||| |||||| ||| || || ||| Sbjct 104100 TGGTCAATGAAGGCGCCGCGATCGGCGGCCATGTCAATCAGCGACTTCTGCTTGATCTCC 104041 Query 128989 CACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGGTATTTCTTCAATGTTCTGCACGCTG 129048 || || || ||||| || || | | | | || ||| ||||||||||| || Sbjct 104040 CAAACGGTCTTGTACAGGTCCTTGAGATCCTGCGGGATTCGGTCAATGTTCTGGACCGAC 103981 Query 129049 CCGTTGTTTGCAATAATTTTGTTTCGCATCTGTTCGTTGTACAAATTCAGTTTGATCAAA 129108 ||||||| ||| || | | || |||| | |||| ||| | | ||||||| Sbjct 103980 CCGTTGTGTGCCATCAGCTGGTGGCGCAAGTCGTCGTCCCACAGGCCCCGGTTGATCAGG 103921 Query 129109 TCGTCGGTCAAGTATTTGTTTATTACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAA 129168 || | || || ||||| || || || ||||| |||| || || | |||| Sbjct 103920 TCCACCAGCAGGTGCTTGTTGATGACGGTGAACTCACCAGCCAGCACACGTCTCGCGTAG 103861 Query 129169 ATGTTGTTGGTGAACGGCTCAAACGATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCG 129228 |||||| | ||| ||||||| || | || ||||| || | || || |||| ||| Sbjct 103860 ATGTTGCTCGTGTACGGCTCGAAGCACTCGTTGTTCCCCAGGATCTGGCTGGTTGACGCT 103801 Query 129229 GTGGGCAT 129236 |||||||| Sbjct 103800 GTGGGCAT 103793 >seq122 Length=778307 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| || || || || | ||||| || ||| |||| || || |||| | | Sbjct 341312 GATGCAAATATTCGTCAAGACGCTTACCGGCAAGACGATCACACTCGATGTGGCGTCGTC 341253 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || | |||| || || || ||||||||||| ||||| || || || Sbjct 341252 GGACACGATCGAGGCCGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCA 341193 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| ||||| || ||||| || || ||| | ||||| |||||| | |||| ||||| Sbjct 341192 ACAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGCACGCTGGCCGACTACAA 341133 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || || || || || Sbjct 341132 CATCCAGAAGGAGTCGAC 341115 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || ||||||||||||||||| ||||| || || || || || || |||||||| Sbjct 759594 AAGATCCAGGACAAGGAGGGTATTCCGCCCGACCAGCAGCGCCTGATCTTCGCCGGCAAG 759535 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| ||||| | |||| |||||||| || ||||| || || Sbjct 759534 CAGCTCGAGGATGGACGCACGCTTGCCGACTACAACATCCAGAAAGAGTCGAC 759482 >seq1 Length=1189627 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || ||||| ||| |||| || || || || | Sbjct 523756 GATGCAGATCTTCGTGAAGACCCTGACGGGTAAGACGATCACGCTCGATGTCGACTCGGG 523697 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| || | || |||| || || || ||||||||||||||||| || || || Sbjct 523696 CGACACGATCGAGACCGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCA 523637 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 ||| ||||| || || || ||||| ||| | |||||| ||||| || |||| ||||| Sbjct 523636 ACAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGGCGCACGCTCGCCGACTACAA 523577 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| || || || || || Sbjct 523576 CATCCAGAAGGAGTCGAC 523559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727155953225