Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq35 203 6e-47 seq112 179 7e-40 seq122 176 8e-39 seq101 95.1 2e-14 >seq35 Length=630556 Score = 203 bits (224), Expect = 6e-47 Identities = 216/285 (76%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 268246 CTGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGC 268305 ||| | ||| ||||||| || |||| |||||| || || ||||| || ||||| || Sbjct 186363 CTGCATCATCATCCACATGGCAGCGACGTAGTCCTTGGCGTGCCCCCAGTCACGCTTGGC 186304 Query 268306 GTCCATGTTCCCGAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCG 268365 ||| |||||||||||| ||||||| | ||| |||||| | | ||| || | | || Sbjct 186303 GTCGATGTTCCCGAGGTACAGGCAGTCCTGTTTGCCGGCCGCGATGCGAGCGACGGCACG 186244 Query 268366 AGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGAT 268425 ||||| || ||||||||||||||| |||||| | ||||| ||||||||||| ||||| Sbjct 186243 CGTGATCTTGCGGGTCACGAACGTCGGGCCACGACGCGGGCTTTCGTGGTTGAACAGGAT 186184 Query 268426 GCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAA 268485 ||| ||| ||||| | ||| || || ||||||||||| || || ||||||| || | Sbjct 186183 GCCATTGGACGCGTGTAGGCCGTACGCTTCACGGTAGTTGACAACAATCCAGTAGGCGTA 186124 Query 268486 CATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGTCGT 268530 | ||| ||||| ||||| || ||||| || | ||| |||||||| Sbjct 186123 CTGCTTGGCAACGGCGTATGGGGAACGCGGGTAGAACGGCGTCGT 186079 Score = 107 bits (118), Expect = 4e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 268567 CTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGC 268626 |||||| || || |||||||||||||| || || || || | | ||||| || Sbjct 185979 CTCGGACGTGGACGCTTGGTAGAACTTGACGGTCTTGCTCAGGCCAGCGGTCCGGATGGC 185920 Query 268627 CTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAA 268686 || |||| ||||| || || | ||| || |||| | || ||||| | ||| || || Sbjct 185919 ATCCAGCAGGCGAAGCGTGCCGAGGCCGTCGACGTTGCCCGTGTACTCGGCCATTTCAAA 185860 Query 268687 TGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCTG 268746 || |||| ||| || ||||| ||| ||||||| || || || || || |||| | Sbjct 185859 GGAGACCTTGACGTGACTCTGCGCGGCCAGGTTGTAGACTTCGTCGGGCCTGACGGTCGT 185800 Query 268747 CACGATCTTCACGAGGTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCA 268793 || ||| | || |||||||| ||||| | ||||| |||||||||| Sbjct 185799 CATGATGTGGACCAGGTTCGTCGAGTCCGACAGGTCGCCGTAGTGCA 185753 >seq112 Length=800634 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || | || ||||| ||||| || |||||||| || |||| | Sbjct 314860 CCACCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 314919 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | ||||| || || || Sbjct 314920 AGGGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATCAGACGCTGTTGATCAGGAGGG 314979 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| || ||||| | |||||| ||||| |||| || || Sbjct 314980 ATGCCCTCCTTGTCCTGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGACA 315039 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| |||||||| || ||||| || ||||||||||| |||||||| Sbjct 315040 TCCAATGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 315086 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || | || | ||| ||||| || |||||||| || |||| | Sbjct 314264 CCACCACGCAGACGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 314323 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | |||||||| || ||| Sbjct 314324 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGA 314383 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| ||||| || | ||||| ||||| | || || || Sbjct 314384 ATACCCTCCTTGTCCTGAATCTTGGCCTTCACAGTTTCGATCGTGTCACCCGAGTCGACG 314443 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| || || || || ||||||||||| |||||||| Sbjct 314444 TCAAGCGTAATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 314490 Score = 138 bits (152), Expect = 2e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| || | || || || ||||| || |||||||| || |||| | Sbjct 314033 CCACCACGCAGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCG 314092 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || ||||| || || Sbjct 314093 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 314152 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT-TCTAC 68413 ||||| ||||| || || ||||| ||||| || | |||||| || || || | | || || Sbjct 314153 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATC-GCCGCTGTCCAC 314211 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| || || || || ||||| || ||||||||||| |||||||| Sbjct 314212 GTCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 314259 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | |||||| |||||||| || || | || ||||| || ||||| || || Sbjct 314698 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCT 314757 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTG 68423 ||||| |||||||| ||||| || | ||||| ||||| | || || || || | || Sbjct 314758 TTGTCCTGAATCTTGGCCTTCACCGTTTCGATTGTGTCACCCGAGTCGACGTCAAGCGTA 314817 Query 68424 ATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 ||||| ||||| || || ||||||||||| |||||||| Sbjct 314818 ATGGTCTTTCCTGTCAGCGTCTTGACGAAGATCTGCAT 314855 >seq122 Length=778307 Score = 176 bits (194), Expect = 8e-39 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291 || || || ||||| || | || | ||| || |||||||| || |||||||| || || Sbjct 759218 TTGCCACCACGAAGACGAAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCC 759277 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 | ||| || | ||| || || | ||||||||| || || || || | || ||||| || Sbjct 759278 GCGAGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAGATCAGACGCTGCTGGTCTGGC 759337 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 || |||||||||||||| |||||||| |||||||| | |||||||||||| | || || Sbjct 759338 GGGATGCCTTCCTTGTCCTGAATCTTCGCCTTGACAGTCTCGATGGTGTCACCAGAATCG 759397 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || |||| |||||||| || || ||||| ||||| ||||| |||||||| Sbjct 759398 ACATCCAGAGTGATGGTCTTCCCAGTGAGCGTCTTCACGAAGATCTGCAT 759447 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| ||||| ||||| || |||||||| || |||| Sbjct 341085 CCACCACGAAGGCGAAGGACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCC 341144 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || || || | |||||||| || ||| Sbjct 341145 AGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGA 341204 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||||||||||||||| ||||| | || | || Sbjct 341205 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGGCCTCGATCGTGTCCGACGACGCCACA 341264 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| || || || || || |||||||||||||| ||||| Sbjct 341265 TCGAGTGTGATCGTCTTGCCGGTAAGCGTCTTGACGAATATTTGCAT 341311 >seq101 Length=873781 Score = 95.1 bits (104), Expect = 2e-14 Identities = 169/247 (68%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 9933 TTCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCC 9992 |||||||| || ||||| ||||| || || || |||||||||||| | ||||||| Sbjct 438941 TTCATGACACCGGCCTTTTGGTATTCACCGACTCGTTTCTCGAAGAAGTTCGTCTTGCCC 439000 Query 9993 TCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAA 10052 | ||| || || ||||| | || || ||||| ||| | | || || || Sbjct 439001 TGAAGGCTGATCAGGTCCATCCACTCGAACGGGTTTTCGACTTTGTAGTGTTTCGGAAGG 439060 Query 10053 CCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112 || || || | | | ||||||||||| |||||||||||||| ||||||| || Sbjct 439061 CCCAGCGCAGCCAGCAACCGGTCAGCCACAAACTCGATGTACTGCGACATCAGGAGAGAA 439120 Query 10113 TTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 ||||||||||| | | || | || ||||||| ||| ||||| || | | || Sbjct 439121 TTCATGCCAATGAGGTCAACTGGTAGCGCATCGCAAACGAATTCCTTCTCAATCTCAACA 439180 Query 10173 GCTTCCT 10179 ||||||| Sbjct 439181 GCTTCCT 439187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921620499153800