Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq68 401 1e-106 >seq68 Length=472887 Score = 401 bits (444), Expect = 1e-106 Identities = 900/1328 (68%), Gaps = 69/1328 (5%) Strand=Plus/Minus Query 243737 ACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTTG 243796 ||| |||||| || || ||||||||| | | | ||||||||||||||| |||||| Sbjct 104244 ACGGTGAACTTGATGGCGTCGACGGCGGGCCGAGATCGCAGGTAGTACATGCCCGTCTTG 104185 Query 243797 AGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGGG 243856 || || | | |||||||| || ||||| | ||||||||| | || | || Sbjct 104184 AGGCCTTTAGTCCAGGCGTAGAAATGCATCGACGTCAGCTTGCCAAAGTTAA----TG-- 104131 Query 243857 TCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGCTC 243915 ||| || || ||||| || || |||||| | ||||| |||| || || Sbjct 104130 ------TCGGTCATGTGGACGTTGAACGATTGCGACTGGTCAATGAAGG-CGCCGCGATC 104078 Query 243916 TGCGGCCATGGTGATGAGGTCCTTCTGA--GATATCTCATACGCCGTCTTGTAGATGGGC 243973 ||||||||| || || |||||| ||| || || ||| |||||||| | | | Sbjct 104077 GGCGGCCATGTCAATCAGCGACTTCTGCTTGATCTCCCAAACG--GTCTTGTACAGGTCC 104020 Query 243974 TTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGG 244033 ||||| | || |||| | || |||||||| ||||| || ||||| | || |||||| Sbjct 104019 TTGAGATCCTGCGGGATTCGGTCAATGTTCTGGACCGACCCGTTGTGTGCCATCAGCTGG 103960 Query 244034 GTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTTC 244093 ||||| || |||| |||||||||| | ||| || | | ||||||| |||| Sbjct 103959 TGGCGCAAGTCGTCGTCCCACAGGCCCCGGTTGATCAGGTCCACCAGCAGGTGCTTGTTG 103900 Query 244094 ACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCG 244153 | || ||||| || | |||||| || | | ||||| |||||| || ||||||| Sbjct 103899 ATGACGGTGAACTCACCAGCCAGCACACGTCTCGCGTAGATGTTGCTCGTGTACGGCTCG 103840 Query 244154 ATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGC 244213 | || ||| |||| ||||| ||||| || ||| || ||||| |||| | |||| Sbjct 103839 AAGCACTCGTTGTTCCCCAGGATCTGGCTGGTTGACGCTGTGGGCATCGGCGCGAGCAGC 103780 Query 244214 AGACTGTTCCTCACGCCGTGCCTCTGGATG-CGGAGTCTGAGCTCGTTCCAGTCCCACAT 244272 | |||| || ||| |||| ||| ||| | | ||| ||| ||||||||| Sbjct 103779 AACGAATTCCGCATGCCATGCCGGGCGATATCGGCCT-TCAGCGCGTCCCAGTCCCAT-- 103723 Query 244273 GCCCGA-GAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGA 244331 | ||| || | | | | || ||||||||| ||||| || | |||| | || Sbjct 103722 -CGCGACGACGGCTTTACATT-------CCACATGTCGAACTGGAGAATGCCCTGG--GA 103673 Query 244332 CG--GGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAG---CTTACAGCT 244386 || |||||||| | | | | |||||| ||||| |||||| ||| || Sbjct 103672 CGCCGGGCTGCCAGGGAACGACTCGTAGGGGCCGTCCTTAACGGCCAGATCCTTGGAGGC 103613 Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT 244446 || ||| || | ||||||| ||||||||||| ||||| |||| |||| Sbjct 103612 A--GTGCAGGCCG-CAAAGTAGATCGTCTCGAAGATGTCGCGGTTCAGTGCGCGCGCCTC 103556 Query 244447 GCCGCAGGT-GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505 | || || ||| ||| | |||| |||||| |||| || || ||||| ||||||| Sbjct 103555 -CGGCGAGTCGAACGGGTACCGCATCTGGATGAAGGCGTCCGCAAGGCCCTGGACGCCGA 103497 Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGC 244565 | |||| ||| ||||||||| |||| || || ||||||||||| |||||| |||||| Sbjct 103496 TTCCGACGGGCCTGTGTCGCATGTTCGATCGGCGCGCTTCGGGCACAGGGTAATAGTTGC 103437 Query 244566 CGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACG--ACGTCGGCCAGCAGCTG 244623 |||||||||||||||| ||||| | || | || | | ||| |||||| |||| || Sbjct 103436 CGTCGATCACCTTGTTCAGGTTCAGCGTTA-CA-GTGTACGTCACGTCGTACAGCTTATG 103379 Query 244624 AAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGAC 244683 |||||| || || |||| |||| | |||| | || |||| Sbjct 103378 GAAGTCGAAC--GT----------GGCGTCAGTGA------CGAACTTGGACAGTGCGAT 103337 Query 244684 GCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCA 244743 |||||||||||||||||| ||| |||| ||||||| ||| || || ||||| Sbjct 103336 CGACGCCAGGTTGCAGACGGCCGTCTCGTCCGCCGACGTGTACTCGACGATTTCCGTGCA 103277 Query 244744 GAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTC 244803 |||||||||| |||||| || ||||||| || || || |||||| |||||| ||||| Sbjct 103276 CAGGTTACTGCTCTTGATCGTCCCCAGGTTCTTCTGGTTCGACTTGCTGTTGCAAGCGTC 103217 Query 244804 CTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGA 244862 |||||| | |||| ||||| ||| || |||| |||||| | |||| ||| | ||| | Sbjct 103216 CTTGTACATCATGTAGGGCGTCCCCGTTTCGACCTGGGCCTCCAGGATCGC-GAACCACA 103158 Query 244863 GGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGG 244922 ||||| ||| ||| |||| | || | |||||| ||| ||||| | |||| | Sbjct 103157 GGTCCTGCGCCCTGATCGTCTTACGTTGCCGGCCCTCGTTCTCATAGCGTTCGAACAGCG 103098 Query 244923 CCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACG-CCGGGCACATGAGA 244981 | |||||||| ||||||||| || | || || |||| | || |||||| | | Sbjct 103097 CAGCGAACTCGTCGCCCCAGACGTCCGCCAGACC-GGGCGCCTCGTTCGGGCAGAACAAC 103039 Query 244982 CTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGG 245041 ||| | | || || ||| || | ||||||||| || ||||| ||||| ||| | | Sbjct 103038 GACCAGTGGGCGTCGGCCTGCACACGCTGCATGAACAGATCGGGAATCCAAAGGCCGTAA 102979 Query 245042 AAGAGGTC 245049 || ||||| Sbjct 102978 AACAGGTC 102971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944337252300400