Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq101 91.5 3e-13 >seq101 Length=873781 Score = 91.5 bits (100), Expect = 3e-13 Identities = 173/253 (68%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 243511 GAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCA--TGCCGGCTTATTG 243568 ||||| ||||| | || ||||||||| ||||||| || | ||| || | || |||| Sbjct 439185 GAAGCTGTTGAGATTGAGAAGGAATTCGTTTGCGATGCGCTACCAGTTGAC--CTCATTG 439128 Query 243569 GCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCG 243628 ||||||| ||| || ||| ||||||||||| || || || ||||| | | | Sbjct 439127 GCATGAATTCTCTCCTGATGTCGCAGTACATCGAGTTTGTGGCTGACCGGTTGCTGGCTG 439068 Query 243629 CGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTT 243688 |||| || | |||| ||||| | | ||||| || | | ||||| || || Sbjct 439067 CGCTGGGCCTTCCGAAACACTACAAAGTCGAAAACCCGTTCGAGTGGATGGACCTGATCA 439008 Query 243689 CGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGTG 243748 ||||| || || || ||||||||||| || || ||| |||| || ||| | |||| Sbjct 439007 GCCTTCAGGGCAAGACGAACTTCTTCGAGAAACGAGTCGGTGAATACCAAAAGGCCGGTG 438948 Query 243749 TGATGAAACCAGA 243761 | ||||| | ||| Sbjct 438947 TCATGAACCAAGA 438935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102877668442750