Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq112 132 5e-26 seq122 125 8e-24 >seq112 Length=800634 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| || | ||||| || |||||| ||||| ||||| || ||||| || ||| | Sbjct 315102 ACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAGCGTGCGCCC 315161 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| || || || || || ||||||||||| | || | || |||||| Sbjct 315162 GTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 315221 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT-TCCACATCGACCGTGA 42171 ||| ||| || || | |||| | | |||||||| || | |||||||| | ||| | Sbjct 315222 ATCCTGGATCTTGGCCTTCACCGTCTCGATCGTGTCGC-CGCTGTCCACATCCAGCGTAA 315280 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 | || |||||||| || ||||| || ||||| ||||| Sbjct 315281 TCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 315317 Score = 116 bits (128), Expect = 4e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 41979 CGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCA 42038 ||||| || | | ||||| || | ||||| ||| |||||| || || ||||| || Sbjct 314030 CGACCACCACGCAGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCG 314089 Query 42039 GCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCT 42098 || || || || | || || |||||||| || ||||| || || ||||||||||| | Sbjct 314090 GCGAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGC 314149 Query 42099 GGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT-TC 42157 || | || |||||| ||| ||| || || | |||| | | ||| |||| || | || Sbjct 314150 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATCGC-CGCTGTC 314208 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || | || || || |||||||| |||||||| || ||||| ||||| Sbjct 314209 CACGTCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 314259 >seq122 Length=778307 Score = 125 bits (138), Expect = 8e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || ||||| || || |||| || |||||||||||||| || Sbjct 341120 CTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCAAA 341179 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || || ||||| ||||| | || | || |||||||||| ||| || |||| | Sbjct 341180 GATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGGC 341239 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | |||||| ||| ||||||||| ||||| || ||||| || |||||||| || Sbjct 341240 CTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTGCCGGTAAGCGTCTTGAC 341299 Query 42197 AAAGATTTGCAT 42208 || |||||||| Sbjct 341300 GAATATTTGCAT 341311 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||||| |||| || ||| || || || ||||| || || || || || | Sbjct 759463 ACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGTCC 759522 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || ||||| || || ||||||||||||| || | | |||||| Sbjct 759523 ATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGAATACCCTCCTT 759582 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGAT-TCCACATCGACCGTGA 42171 |||| ||| || || | ||| | | |||||| | || | || || |||| ||| | Sbjct 759583 GTCCTGGATCTTGGCCTTCACGGTCTCGATCGTGTCAC-CGCTGTCGACGTCGAGCGTAA 759641 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| |||||||| || ||||| || ||||| ||||| Sbjct 759642 TGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 759678 Score = 111 bits (122), Expect = 2e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || || || || ||| |||| || |||||||| || || || Sbjct 759256 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAA 759315 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || ||||||||||| | || | || ||||||||| ||| | || | |||| | Sbjct 759316 GATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCC-TGAATCTTCGCCTTGACAG 759374 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 || | | ||||| | || || ||||| | |||||||| || || || |||||||| | Sbjct 759375 TCTCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGTCTTCCCAGTGAGCGTCTTCA 759434 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 759435 CGAAGATCTGCAT 759447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543211679623600