Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq68 251 7e-62 >seq68 Length=472887 Score = 251 bits (278), Expect = 7e-62 Identities = 610/911 (67%), Gaps = 32/911 (4%) Strand=Plus/Plus Query 94467 GATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAA 94526 |||| |||| | ||||| || ||||| ||||||||||| ||| ||||||| || ||| Sbjct 103168 GATCCTGGAGGCCCAGGTCGAAACGGGGACGCCCTACATGATGTACAAGGACGCTTGCAA 103227 Query 94527 CGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGAT 94586 | |||||| |||||| || |||| ||| |||||||||| || |||||||| || || Sbjct 103228 CAGCAAGTCGAACCAGAAGAACCTGGGGACGATCAAGAGCAGTAACCTGTGCACGGAAAT 103287 Query 94587 TGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTC 94646 |||||||| || || ||||||||| || || || ||||||| || ||| ||||| Sbjct 103288 CGTCGAGTACACGTCGGCGGACGAGACGGCCGTCTGCAACCTGGCGTCGATCGCACTGTC 103347 Query 94647 CACTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAA 94706 || ||||| || ||| |||| | |||| | | ||| | || |||| Sbjct 103348 CAAGTTCGTCACTGACGCC---ACGTT--CGACTTCCATA-AGCTGTACGAC---GTGAC 103398 Query 94707 CTTCGCGGGAAGGATGGTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGT 94766 | | | | || | || |||||||||| ||| |||||| |||| ||||| || Sbjct 103399 GTACACTGTAACGCTG------AACCTGAACAAGGTGATCGACGGCAACTATTACCCTGT 103452 Query 94767 -CCCGGAG-GCGGAGAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGT 94824 |||| || ||| || || ||| || || ||||| |||| |||||||||||||| Sbjct 103453 GCCCGAAGCGCGCCGA--TCGAACATGCGACACAGGCCCGTCGGAATCGGCGTCCAGGGC 103510 Query 94825 TTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTG 94884 | |||||||| | | |||||| || | |||||| || ||| | || Sbjct 103511 CTTGCGGACGCCTTCATCCAGATGCGGTACCCGTTCGACTCGCCGGAGGCGCGCGCACTG 103570 Query 94885 AATTTGAACATATTCGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACT----T 94940 || |||| ||||| | || || | | |||| || || | | |||| | Sbjct 103571 AACCGCGACATCTTCGAGACGATCTACTTTGCGGCC-TG---CACTGCCTCCAAGGATCT 103626 Query 94941 GGCCAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCAT 95000 |||| ||||||| || |||| ||||||| || || | |||||||| Sbjct 103627 GGCCGTTAAGGACGGC---CCCTACGAGTCGTTCCCTGGCAGCCCGGCGTCCCAGGGCAT 103683 Query 95001 TTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACG 95060 | | ||||||||| | ||| ||| ||||| ||| | | |||||||| || || Sbjct 103684 TCTCCAGTTCGACATGTGGAATGTAAAGCCGTCGTCGCGATGGGACTGGGACGCGCTGAA 103743 Query 95061 CGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGC 95120 || ||| | | || || || || || |||| | || || |||||||| || Sbjct 103744 GGCCGATATCGCCCGGCATGGCATGCGGAATTCGTTGCTGCTCGCGCCGATGCCCACAGC 103803 Query 95121 CTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTA 95180 || || |||||||| || |||||||||| ||||| || | ||| |||| | || Sbjct 103804 GTCAACCAGCCAGATCCTGGGGAACAACGAGTGCTTCGAGCCGTACACGAGCAACATCTA 103863 Query 95181 CAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCT 95240 | || || ||||| || || || ||| ||||||||||||||||||| || |||||| Sbjct 103864 CGCGAGACGTGTGCTGGCTGGTGAGTTCACCGTCATCAACAAGCACCTGCTGGTGGACCT 103923 Query 95241 GACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGC-CAACGGCT 95299 || | ||| |||||| ||| | | |||| ||| | || | |||||| | Sbjct 103924 GATCAACCGGGGCCTGTGGGACGACGACTTGCGCCACCAGCTGAT-GGCACACAACGGGT 103982 Query 95300 CCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGG 95359 | ||||||||||| | ||| ||| |||| |||||| || ||||||||||| |||| Sbjct 103983 CGGTCCAGAACATTGACCGAATCCCGCAGGATCTCAAGGACCTGTACAAGACCGTTTGGG 104042 Query 95360 AGATCCCGCAG 95370 ||||| |||| Sbjct 104043 AGATCAAGCAG 104053 Score = 212 bits (234), Expect = 6e-50 Identities = 342/492 (70%), Gaps = 0/492 (0%) Strand=Plus/Plus Query 93721 GATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGGGTT 93780 || || || | |||||| || ||||| ||||||||| || ||| | || |||| | | Sbjct 102367 GACTATTTCGGCTTCAAGACCCTGGAACGGTCGTACCTGCTGAAGGTCGACGGCAAGATC 102426 Query 93781 TCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGACATG 93840 ||||||| || || || ||||||||||||||||| |||| || ||| || || Sbjct 102427 GCCGAGCGCCCACAGCACATGCTGATGCGCGTCGCCGTCGGCATCCACAAGTCGGATATC 102486 Query 93841 CCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCACCCCG 93900 || | | | | | || |||| || ||| ||| || || ||||| Sbjct 102487 GCGGCGGCCATCCAAACGTACAACCTCATGTCCGAGAAGTGGTTCACGCACGCGTCCCCG 102546 Query 93901 ACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAAC 93960 ||| |||||||||| || || || || || || ||||| || || |||||| || || | Sbjct 102547 ACCATGTTCAACGCCGGCACGCCCGTCCCGCAAATGTCGTCCTGCTTCCTGGTGGCGCTC 102606 Query 93961 AAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAA 94020 ||| |||||||||| || || | ||||| || || || || | |||||| || Sbjct 102607 AAGAACGACTCCATCGAGGGCATCTACGACACGCTGCGCGAATGCGCCATCATCTCCAAG 102666 Query 94021 TACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATCCGC 94080 | || || || || || || || ||| |||| || |||| || |||||||| || Sbjct 102667 TCGGCCGGCGGCATTGGCGTCCACGTGCACAACGTGCGCGCCACCGGCTCCTACATTCGT 102726 Query 94081 GGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCG 94140 ||||| || ||||| || |||||| ||||||| ||||| || || ||| | || | || Sbjct 102727 GGTACGAACGGCACGTCGAACGGCATCGTCCCCATGCTTCGCGTGTTCTCCGACACTGCC 102786 Query 94141 CGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCC 94200 |||||||| |||||||| || |||| | ||||| | ||||| || || || || || Sbjct 102787 CGCTACGTCGACCAGGGCGGCGGGAAACGCAAGGGCGCGTTCGCCGTGTACCTGGAACCG 102846 Query 94201 TGGCACGCGGAC 94212 |||||||||||| Sbjct 102847 TGGCACGCGGAC 102858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722179633400