Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq68 208 8e-49 seq1 111 2e-19 seq112 98.7 1e-15 seq122 93.3 4e-14 seq101 86.0 6e-12 >seq68 Length=472887 Score = 208 bits (230), Expect = 8e-49 Identities = 347/496 (70%), Gaps = 9/496 (2%) Strand=Plus/Minus Query 154021 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTTCCGCC-- 154078 ||||||| |||||||| ||||| | ||| ||||| | || || || || || ||||| Sbjct 102862 AGATGTCCGCGTGCCACGGTTCCAGGTACACGGCGAACGCGCCCTTGCGTTTCCCGCCGC 102803 Query 154079 -CTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTG 154137 ||| ||||||| ||| | | | | ||| ||||| | |||||| | | |||| | | Sbjct 102802 CCTGGTCGACGTAGCGGGCAGTGTCGGAGAACACGCGAAGCATGGGGACGATGCCGTTCG 102743 Query 154138 CGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGC 154197 |||||||| || | || | | |||| ||||||||| | ||||||| |||| Sbjct 102742 ACGTGCCGTTCGTACCACGAATGTAGGAGCCGGTGGCGCGCACGTTGTGCACGTGGACGC 102683 Query 154198 CAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCGT 154257 ||||||||||| | |||| || ||| ||||| |||| |||||| ||||||||| | Sbjct 102682 CAATGCCGCCGGCCGACTTGGAGATGATGGCGCATTCGCGCAGCGTGTCGTAGATGCCCT 102623 Query 154258 CGATGCTATCGTCGCGGA-CGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGCGTT 154316 ||||| |||| || |||| | || ||| || || |||||||||| | | |||| Sbjct 102622 CGATGGAGTCGTTCTTGAGCGCC-ACCAGGAAGCAGGACGACATTTGCGGGACGGGCGTG 102564 Query 154317 CCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGGTAC 154376 || || || | ||| || ||||||||| ||| || | | ||| | | |||| Sbjct 102563 CCGGCGTTGAACATGGTCGGGGACGCGTGCGTGAACCACTTCTCGGACATGAGGTTGTAC 102504 Query 154377 GTTTCGATGGCGTCTTCGATATCATCGCC--GTGAATGCCGAGCGCGACGCGCATGAGCA 154434 |||| |||||| | ||||||| || | ||| ||||||| ||||||||||| |||| Sbjct 102503 GTTTGGATGGCCGCCGCGATATC--CGACTTGTGGATGCCGACGGCGACGCGCATCAGCA 102446 Query 154435 TGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATATCCATTTTCGAGGG 154494 ||||||| || || ||||||| | ||| | ||||| || || ||| |||| Sbjct 102445 TGTGCTGTGGGCGCTCGGCGATCTTGCCGTCGACCTTCAGCAGGTACGACCGTTCCAGGG 102386 Query 154495 TTTTGTAACCGAAATA 154510 | ||| | |||||||| Sbjct 102385 TCTTGAAGCCGAAATA 102370 Score = 185 bits (204), Expect = 9e-42 Identities = 771/1183 (65%), Gaps = 58/1183 (5%) Strand=Plus/Minus Query 152817 TTAAACGATTGGCTCTGATCTATGAAAGCGTTACGGTCGGCCGCCATCTCAATCATGCG- 152875 || |||||||| ||| || ||||| ||| || ||||| ||||| ||||||| ||| Sbjct 104115 TTGAACGATTGCGACTGGTCAATGAAGGCGCCGCGATCGGCGGCCATGTCAATCA-GCGA 104057 Query 152876 -TTTTGCCTTCATCTCCCAGGCGGTTTTGTACAAATTTTTAACGCTATCCGGTATACCTT 152934 || ||| || |||||||| |||| ||||||| | || | | ||| || | | Sbjct 104056 CTTCTGC-TTGATCTCCCAAACGGTCTTGTACAGGTCCTTGAGATCCTGCGGGATTCGGT 103998 Query 152935 CAATGTTCTGAATAGAGCCCTTGTGTGCAAAAATAGCGTTTCGTATTTCGGGCGTGT-AC 152993 |||||||||| | || || |||||||| | | || || | ||| ||| || Sbjct 103997 CAATGTTCTGGACCGACCCGTTGTGTGCCATCAGCTGGTGGCGCAAGTCGT-CGTCCCAC 103939 Query 152994 ACGTTCAGTTTAATGAGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCC 153053 | | | | || || ||||| | | || || || ||||| || ||||| || ||| Sbjct 103938 AGGCCCCGGTTGATCAGGTCCACCAGCAGGTGCTTGTTGATGACGGTGAACTCACCAGCC 103879 Query 153054 AACACTCGTCTCAAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGT 153113 | ||| |||||| || | ||||| ||| | || || ||| | ||||| || || || Sbjct 103878 AGCACACGTCTCGCGTAGATGTTGCTCGTGTACGGCTCGAAGCACTCGTTGTTCCCCAGG 103819 Query 153114 ATTTGAGCCGTGGTTG---CGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCG 153170 || || || |||||| | || ||||| ||| | || ||| |||||||||| ||| Sbjct 103818 ATCTG-GC--TGGTTGACGCTGTGGGCATCGGCGCGAGCAGCAACGAATTCCGCATGCCA 103762 Query 153171 TGC-GCTCGAATGTCGTCCTTCAACGCCTGCCAATCCCACAGCGCCGACGGTGTCGCGTT 153229 ||| | ||| | ||| |||||| ||| | ||| ||||| ||| |||||| | | || Sbjct 103761 TGCCGGGCGA-TATCGGCCTTCAGCGCGTCCCAGTCCCATCGCGACGACGGCTTTACATT 103703 Query 153230 CCACATGTCGTACTGTAACACTCCTCGACTGGCGGGACTGCCGGCAAACGTACT-GTAGC 153288 |||||||||| |||| | | || | || || ||||| | |||| ||| |||| Sbjct 103702 CCACATGTCGAACTGGAGAATGCCCTGGGACGCCGGGCTGCCAGGGAACG-ACTCGTAGG 103644 Query 153289 TGCCGTCGCGTTGGGCCAGTTC---GCAGCTAGCCTCGAGCGCGCCATAGTATATGGTTT 153345 |||||| |||||| || | || || | || ||| | |||| || || | Sbjct 103643 GGCCGTCCTTAACGGCCAGATCCTTGGAGGCAG--TGCAGGCCGCAA-AGTAGATCGTCT 103587 Query 153346 CGGCGATTTGTTTATTGAGAACGGCCGCTTCTTCGCTCTCGTACGGCATGCGCAGCAGCA 153405 || ||| | || || || ||| || ||| |||| |||| | | | Sbjct 103586 CGAAGATGTCGCGGTTCAGTGCGCGCGCCTCCGGCGAGTCGAACGGGTACCGCATCTGGA 103527 Query 153406 CAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGATGGG------TCG-ATGCTTC--T 153456 |||||||| || || ||||||| |||| |||| ||| ||| ||| ||| | Sbjct 103526 TGAAGGCGTCCGCAAGGCCCTGGACGCCGATTCCGACGGGCCTGTGTCGCATG-TTCGAT 103468 Query 153457 CGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGT 153516 || || |||| ||| || | || || | |||| ||||| | ||||| |||| Sbjct 103467 CG--GC-GCGCTTCGGGCACA-----GGGTAATAGTTGCCGTCGATCACCTTGTTCAGGT 103416 Query 153517 TGCGCACCACCACTTTAGTTATCGCCTTA-AGTTTCTCGAAATCATAGGTCATTTCGTCG 153575 | || || | | || | || | || || || | ||| || | || || | Sbjct 103415 TCAGCGTTAC-AGTGTACGTCACGTCGTACAGCTTATGGAAGTCGAACGTGGCGTCAGTG 103357 Query 153576 ACGCGTACGCATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGC- 153634 ||| | | || || || || |||||||| || |||||||||||||| || || Sbjct 103356 ACGAA----CTTGGA--CAGTGCGATCGACGCCAGGTTGCAGACGGCCGTCTCGTCCGCC 103303 Query 153635 GTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTG 153694 | || |||||| ||||| || | ||| ||||| |||| || || |||| || | Sbjct 103302 GACG-TGTACTCGACGATTTCCGTGCACAGGTTACTGCTCTTGATCGTCCCCAGGTTCTT 103244 Query 153695 CTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGAC 153754 ||| || |||| ||||| ||||| ||| | | |||||| || || || ||||| Sbjct 103243 CTGGTTCGACTTGCTGTTGCAAGCGTCCTTGTACATCATGTAGGGCGTCCCCGTTTCGAC 103184 Query 153755 TTGCGTTTCGACGATA---AACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCG 153811 || | || | ||| |||| |||||||||||| | | | || || | || Sbjct 103183 CTGGGCCTCCAGGATCGCGAACCA---CAGGTCCTGCGCCCTGATCGTCTTACGTTGCCG 103127 Query 153812 GCCCTCGCTCTCGTATCGCTCGTACAGTCGCT-CAAACTCGTCGCCGTAGCAGTCGGCGA 153870 ||||||| |||| || || ||| |||| ||| | ||||||||||| || ||| || | Sbjct 103126 GCCCTCGTTCTCATAGCGTTCGAACAG-CGCAGCGAACTCGTCGCCCCAGACGTCCGCCA 103068 Query 153871 GGCCGGGACACTGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCA 153930 | ||||| || | ||| || | || |||||| ||||||| | || || ||| Sbjct 103067 GACCGGGCGCCTCGTTCGGGCAGAACAACGACCAGTGGGCGTCGGCCTGCACACGCTGCA 103008 Query 153931 TGAACAGATCCGGCACCCAGAGCGCGTACATGAGGTCGCGCGC 153973 |||||||||| || | ||| || |||| | ||||| || || Sbjct 103007 TGAACAGATCGGGAATCCAAAGGCCGTAAAACAGGTCACGAGC 102965 >seq1 Length=1189627 Score = 111 bits (122), Expect = 2e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || ||| |||||||| || || || | Sbjct 523562 GACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCATCCTCGAGCTGCTTGCCAGCG 523621 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||||||||||||||| ||||| || ||||| || | || | || | Sbjct 523622 AAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTC-CTGGATCTTGGCCTTGAC 523680 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 || || | |||||| ||| || || |||| ||| | ||| ||||| ||||| || || Sbjct 523681 GGTCTCGATCGTGTCGCCCGAGTCGACATCGAGCGTGATCGTCTTACCCGTCAGGGTCTT 523740 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 523741 CACGAAGATCTGCAT 523755 >seq112 Length=800634 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||||| ||| | ||| | | |||||||| || |||||||||||| Sbjct 314264 CCACCACGCAGACGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 314323 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||| || || || |||| |||| ||||||||||||||||| || Sbjct 314324 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGA 314383 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTG-TTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| | || | || | | ||| | ||||| ||| || || Sbjct 314384 ATACCCTCCTTGTC-CTGAATCTTGGCCTTCACAGTTTCGATCGTGTCACCCGAGTCGAC 314442 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | || || || ||||| || || || || |||||||| Sbjct 314443 GTCAAGCGTAATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 314490 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| |||| ||||| || | ||| | | |||||||| |||||||||||||| | Sbjct 315091 CCGCCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCC 315150 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || ||| |||||| || || || |||| | |||| |||||||| ||||| || || Sbjct 315151 AGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGG 315210 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCAC 138566 || || || || || || | || | || | || || | |||||| ||||| Sbjct 315211 ATGCCCTCCTTATC-CTGGATCTTGGCCTTCACCGTCTCGATCGTGTCGCCGCTGTCCAC 315269 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | ||| || || ||||| || || || || |||||||| Sbjct 315270 ATCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 315317 >seq122 Length=778307 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| || || || |||||| || || ||||| | | Sbjct 341118 GACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTACCAGCA 341177 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||||||||||||||| || || || || ||||| ||| || || | Sbjct 341178 AAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACG 341237 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || | ||||| | |||| |||| |||| || | ||| || || || || || || Sbjct 341238 GCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTGCCGGTAAGCGTCTTG 341297 Query 138601 ACAAAAATCTGCAT 138614 || || || ||||| Sbjct 341298 ACGAATATTTGCAT 341311 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||| | || | | | |||||||| || ||||||||||| Sbjct 759220 GCCACCACGAAGACGAAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGC 759279 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || ||| |||||| || || || || | | |||| |||||||| ||||| || || Sbjct 759280 GAGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAGATCAGACGCTGCTGGTCTGGCGG 759339 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGT-TCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || | || | || || | |||||| || || | Sbjct 759340 GATGCCTTCCTTGTC-CTGAATCTTCGCCTTGACAGTCTCGATGGTGTCACCAGAATCGA 759398 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | || || ||||| || || || || || |||||||| Sbjct 759399 CATCCAGAGTGATGGTCTTCCCAGTGAGCGTCTTCACGAAGATCTGCAT 759447 >seq101 Length=873781 Score = 86.0 bits (94), Expect = 6e-12 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 52611 AAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTG 52670 ||||| || || | || || ||||| || || | ||||| || || || || | Sbjct 439188 AAGGAAGCTGTTGAGATTGAGAAGGAATTCGTTTGCGATGCGCTACCAGTTGACCTCATT 439129 Query 52671 GGCATGAACGCGCAGTCC--ATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGG 52728 |||||||| | | ||| |||| ||||||||||||||||||| || || || ||| Sbjct 439128 GGCATGAATTCTC--TCCTGATGTCGCAGTACATCGAGTTTGTGGCTGACCGGTTGCTGG 439071 Query 52729 -TGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCG-CAATCCGTTTGAGTTTATGAACAA 52786 ||| ||| || | || || ||| ||| | ||| || ||||| |||| ||| || Sbjct 439070 CTGC-GCTGGGCCTTCCGAAACACTACAAAG-TCGAAAACCCGTTCGAGTGGATGGACCT 439013 Query 52787 CATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || ||| |||||||||| ||||| |||||||| |||||||| || || Sbjct 439012 GATCAGCCTTCAGGGCAAGACGAACTTCTTCGAGAAACGAGTCGGTGAATA 438962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496261376458800