Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq122 118 1e-21 seq68 107 2e-18 seq1 100 3e-16 seq112 98.7 9e-16 seq83 93.3 4e-14 >seq122 Length=778307 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 ||| || || | |||| ||||| || | || |||||||| || || ||||| ||| | Sbjct 759451 TCCGCCACGAAGACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGC 759510 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | |||||| ||| || ||||| || || ||| |||||| |||||||| ||||| || Sbjct 759511 AAGCGTGCGTCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGG 759570 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||| | |||| ||||| || ||||| Sbjct 759571 AATACCCTCCTTGTCCTGGATCTTGGCCTTCACGGTCTCGATCGTGTCACCGCTGTCGAC 759630 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 |||| || | || ||||| ||||| || || || || |||||||||| Sbjct 759631 GTCGAGCGTAATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATGG 759680 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||| ||| ||| |||||| || || ||||| || || Sbjct 341114 CGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGCTTACC 341173 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| |||||| ||||| || || || || ||||||||||||||| ||| || ||| Sbjct 341174 AGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTGGCCTT 341233 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || |||| ||||||| | | || |||| || | ||| |||||||| || || Sbjct 341234 GACGGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTGCCGGTAAGCGT 341293 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 341294 CTTGACGAATATTTGCAT 341311 >seq68 Length=472887 Score = 107 bits (118), Expect = 2e-18 Identities = 238/352 (68%), Gaps = 4/352 (1%) Strand=Plus/Minus Query 145858 GATTGGCTCTGATCAATGAAAGGAGCC-CGGTCGGCGGCCATGTCTATCATGCACTTTGA 145916 ||||| ||| |||||||| || ||| || |||||||||||||| |||| |||| Sbjct 104109 GATTGCGACTGGTCAATGAA-GGCGCCGCGATCGGCGGCCATGTCAATCAGCGACTTCTG 104051 Query 145917 TTTAATTTCCCATGCGGTTTTAAAGAGATCCTTGACGTGCTGGGGTATTTCGTCAATGTT 145976 || || ||||| |||| || | || ||||||| | ||| || ||| ||||||||| Sbjct 104050 CTTGATCTCCCAAACGGTCTTGTACAGGTCCTTGAGATCCTGCGGGATTCGGTCAATGTT 103991 Query 145977 CTGCACAGACCCATTTTCGGCCAATATTTTGTTGCGCAATTCTGGAGT-GTAAATGTTCA 146035 ||| || ||||| || | |||| | | || |||||| || | || | | | | Sbjct 103990 CTGGACCGACCCGTTGTGTGCCATCAGCTGGTGGCGCAAGTC-GTCGTCCCACAGGCCCC 103932 Query 146036 AGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAACGC 146095 || | ||| || | || | || ||||| || ||||| || || || || | Sbjct 103931 GGTTGATCAGGTCCACCAGCAGGTGCTTGTTGATGACGGTGAACTCACCAGCCAGCACAC 103872 Query 146096 GCCTCAGATACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCG 146155 | ||| || | |||||| ||| |||||||||| |||||||||| || || ||||| Sbjct 103871 GTCTCGCGTAGATGTTGCTCGTGTACGGCTCGAAGCACTCGTTGTTCCCCAGGATCTGGC 103812 Query 146156 CCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTG 146207 || | || || ||||| ||| | |||||| || || | || ||| || Sbjct 103811 TGGTTGACGCTGTGGGCATCGGCGCGAGCAGCAACGAATTCCGCATGCCATG 103760 >seq1 Length=1189627 Score = 100 bits (110), Expect = 3e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| ||||| || || || ||||| ||| | | |||||| ||| || ||||| || || Sbjct 523558 CGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCATCCTCGAGCTGCTTGCC 523617 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 |||| |||||| ||||| || || ||||| || |||||||||||| ||| || ||| Sbjct 523618 AGCGAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTT 523677 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || |||| ||||| ||||| |||| || | ||| || || ||||| || Sbjct 523678 GACGGTCTCGATCGTGTCGCCCGAGTCGACATCGAGCGTGATCGTCTTACCCGTCAGGGT 523737 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 523738 CTTCACGAAGATCTGCAT 523755 >seq112 Length=800634 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| || | ||| | ||| ||||| || || || ||||| ||| | Sbjct 314860 CCACCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 314919 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| ||||| ||| | |||| ||||| ||||| ||||| Sbjct 314920 AGGGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATCAGACGCTGTTGATCAGGAGGG 314979 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| | | || |||| |||| ||||| ||||| Sbjct 314980 ATGCCCTCCTTGTCC-TGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGAC 315038 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| || || || || || || |||||||| Sbjct 315039 ATCCAATGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCAT 315086 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| || | ||| | || ||||| || || || ||||| ||| | Sbjct 314033 CCACCACGCAGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCG 314092 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || ||| |||||| |||||||| || || || Sbjct 314093 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 314152 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| ||| ||| || ||| | |||| || || || || || Sbjct 314153 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATCGCCGCTGTCCACG 314212 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | ||| ||||| ||||| || || || || |||||||| Sbjct 314213 TCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 314259 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| || | ||| | ||| ||||| || ||||| ||||| || ||| |||||| Sbjct 315103 CGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAGCGTGCGCCCG 315162 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || || |||||| |||||||| || || || ||||||||||| Sbjct 315163 TCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTA 315222 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | |||| ||||| || || || || | || | | Sbjct 315223 TCCTGGATCTTGGCCTTCACCGTCTCGATCGTGTCGCCGCTGTCCACATCCAGCGTAATC 315282 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || ||||| ||||| || || || || |||||||| Sbjct 315283 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 315317 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| || | ||| | ||| ||||| || || || ||||| ||| | Sbjct 314264 CCACCACGCAGACGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCG 314323 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || ||||| || || ||| |||||| ||||| || || || || Sbjct 314324 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGA 314383 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTC---TCG 127063 || |||||||||||| || || ||| | ||||| ||||| || | ||| Sbjct 314384 ATACCCTCCTTGTCCTGAATCTTGGCCTTCACAGTTTCGATCGTGTC---ACCCGAGTCG 314440 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | || || || ||||| || || || || |||||||| Sbjct 314441 ACGTCAAGCGTAATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 314490 >seq83 Length=380421 Score = 93.3 bits (102), Expect = 4e-14 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 50660 ATGTTGCCCAGATCGCCGACGTGGCGGTCGACGGCGTTGGGAGCGCCGTGGTTGCGGCCC 50719 |||||||| || ||||||||||| || ||| | || ||| ||||| || | ||| Sbjct 22497 ATGTTGCCAAGGTCGCCGACGTGCCGCTCGGTGTCGGCGGGCGCGCCATGCGTCTTGCCG 22438 Query 50720 AACGGATTAAAGTGCTCGCCGGCCGACGTGCAGCCGTTGC-TCGTGTCGCCGAATTCGTG 50778 |||||||| ||||| |||||| ||| | ||| || |||| ||||||||||| || || Sbjct 22437 AACGGATTGTAGTGCCCGCCGGTCGATGCGCACCC-TTGCGTCGTGTCGCCGTGCTCATG 22379 Query 50779 CACGTGGAACCCGTG 50793 |||||||| ||||| Sbjct 22378 GACGTGGAAGCCGTG 22364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475499819279600