Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq68 111 1e-19 seq122 93.3 4e-14 seq112 93.3 4e-14 >seq68 Length=472887 Score = 111 bits (122), Expect = 1e-19 Identities = 294/443 (66%), Gaps = 7/443 (2%) Strand=Plus/Plus Query 122890 TCGAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGC 122949 |||| | ||| ||||||| || || || ||||| ||||||||||| | ||| | | Sbjct 102413 TCGACGGCAAGATCGCCGAGCGCCCACAGCACATGCTGATGCGCGTCGCCGTCGGCATCC 102472 Query 122950 ACG-GACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTC 123008 || | || || |||| || | | |||| ||| | | ||||| | || | ||| Sbjct 102473 ACAAGTCG-GATATCGCGGCGGCCATCCAAACGTACAACCTCATGTCCGAGAAGTGGTTC 102531 Query 123009 ACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGT 123068 ||||||||| || || ||||| |||||||||| | || || |||| || || Sbjct 102532 ACGCACGCGTCCCCGACCATGTTCAACGCCGGCACGCCCGTCCCGCAAATGTCGTCCTGC 102591 Query 123069 TTTTTGCTCACCTTGCGCGAA-GACAGCATCACCGGTATCTATGAAACTTTGCGCGATTG 123127 || || | | | | ||| ||| |||| || ||||| || || ||||||| || Sbjct 102592 TTCCTGGTGGCGCT-CAAGAACGACTCCATCGAGGGCATCTACGACACGCTGCGCGAATG 102650 Query 123128 CGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCG 123187 ||| | || ||||| | | ||||||||| ||||| |||||||| |||| | | | Sbjct 102651 CGCCATCATCTCCAAGTCGGCCGGCGGCATTGGCGTCCACGTGCACAACGTGCGCGCCAC 102710 Query 123188 CGGAAGCCGCATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGT 123247 ||| | ||| | | || |||| | | ||| ||| ||||||| || || Sbjct 102711 CGGCTCCTACATTCGTGGTACGAACGGCACGTCGAACGGCATCGTCCCCATGCTTCGCGT 102770 Query 123248 TTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC---AAACGCAAAGGCGCGATGGC 123304 | | || | | || ||||||||||||||||| |||||||| |||||| | || Sbjct 102771 GTTCTCCGACACTGCCCGCTACGTCGACCAGGGCGGCGGGAAACGCAAGGGCGCGTTCGC 102830 Query 123305 GATCTATCTAGAACCGTGGCACG 123327 | || || ||||||||||||| Sbjct 102831 CGTGTACCTGGAACCGTGGCACG 102853 >seq122 Length=778307 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCC 45191 || || |||||||| || ||||| ||||| || || ||| | || || ||| Sbjct 341103 ACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCC 341162 Query 45192 AATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGA 45251 | || || || || | |||| || || ||||||||||||||||| || || || || Sbjct 341163 AGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGG 341222 Query 45252 ATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTG 45311 || || |||| || || | ||||| || ||| | || ||||| || | ||| ||| Sbjct 341223 ATCTTGGCCTTGACGGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTG 341282 Query 45312 CCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342 ||||| || || || || || |||||||||| Sbjct 341283 CCGGTAAGCGTCTTGACGAATATTTGCATCG 341313 >seq112 Length=800634 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | || || ||||||||||| || ||||| ||||| || || ||| | Sbjct 314860 CCACCACGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCG 314919 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| |||| || ||||| ||| | |||| || || || || || || Sbjct 314920 AGGGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAAATCAGACGCTGTTGATCAGGAGGG 314979 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || || || ||||| || ||||| || || | |||||| || ||||| Sbjct 314980 ATGCCCTCCTTGTCCTGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGACA 315039 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCG 45342 || | || | || ||||| || || || || || || || ||||||| Sbjct 315040 TCCAATGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCATCG 315088 Score = 89.7 bits (98), Expect = 5e-13 Identities = 162/237 (68%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || | || || |||||||| || || ||||| ||||| || || ||| | Sbjct 314033 CCACCACGCAGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCG 314092 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| |||| || || || ||| | |||| || |||||||||||||| Sbjct 314093 AGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 314152 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || ||||| || || || || | || || | || ||| || || Sbjct 314153 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATCGCCGCTGTCCACG 314212 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGACCA 45350 || || |||| ||| ||||| || || || || || || || ||||||| | |||| Sbjct 314213 TCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATCGTACCACCA 314269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002267743400