Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq68 158 1e-33 seq35 111 2e-19 >seq68 Length=472887 Score = 158 bits (174), Expect = 1e-33 Identities = 672/1044 (64%), Gaps = 32/1044 (3%) Strand=Plus/Minus Query 115555 GATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAG 115614 ||||| ||||||||||| ||||||||||| || | ||||||| || | |||||| || Sbjct 104211 GATCGCAGGTAGTACATGCCCGTCTTGAGGCCTTTAGTCCAGGCGTAGAAATGCATCGAC 104152 Query 115615 GACAACTTGG-AGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGAT 115673 | || |||| | ||| | | || ||| || ||| | ||| || || || || Sbjct 104151 GTCAGCTTGCCAAAGTTAATGTCGGTC-ATGTGGACGTTGAACGATTGCGACTGGTCAAT 104093 Query 115674 GAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGT 115733 |||| || ||||| || ||||| ||||||| |||| |||||| ||||| || || Sbjct 104092 GAAGGCGCCGCGATCGGCGGCCATGTCAATCAGCGACTTCTGCTTGATCTCCCAAACGGT 104033 Query 115734 TCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGC 115793 |||| |||| ||| | ||| | ||||| | || || |||| || || || Sbjct 104032 CTTGTACAGGTCCTTGAGATCCTGCGGGATTCGGTCAATGTTCTGGACCGACCCGT-TGT 103974 Query 115794 CTTGACCATGAGATCCTT---CATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTC 115850 | |||| || | | || || | ||| || || || | || ||| | Sbjct 103973 GTG--CCATCAGCTGGTGGCGCAAGTCGTCGTCCCACAGGCCCCGGTTGATCAGGTCCAC 103916 Query 115851 CACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTT 115910 || |||||||| |||| || |||||||| || || |||||| |||||||| Sbjct 103915 CAGCAGGTGCTTGTTGATGACGGTGAACTCACCAGCCAGCACACGTCTCGCGTAGATGTT 103856 Query 115911 GGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGG 115970 | ||||||| ||||| |||||||| ||||| |||| ||| ||| || || |||||||| Sbjct 103855 GCTCGTGTACGGCTCGAAGCACTCGTTGTTCCCCAGGATCTGGCTGGTTGACGCTGTGGG 103796 Query 115971 CATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGC 116030 ||| || || | || | || || | || || || |||| || || Sbjct 103795 CATCGGCGCGAGCAGCAACGAATTCCGCATGCCATGCCGGGCGATATCGGCCTTCAGCGC 103736 Query 116031 GTCCCAGTCGTAGTTGAG-CTTTGTCTCCCCCTCCCACATATCAAACTGGAGGATACCTT 116089 ||||||||| | | | | | | || | | |||||| || |||||||| || || | Sbjct 103735 GTCCCAGTCCCA-TCGCGACGACGGCTTTACATTCCACATGTCGAACTGGAGAATGCCCT 103677 Query 116090 GGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTC---GG 116146 ||||||| || || || | ||| || ||||| || | |||| || || Sbjct 103676 GGGACGCCGGGCTGCCAGGGAACGACTCGTAGGGGCCGTCCTTAACGGCCAGATCCTTGG 103617 Query 116147 AGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATG-CGAGCATTCATTGCCTTG 116205 || || | ||| || || || ||||| || ||| || | |||| ||| Sbjct 103616 AG---GCAGTGCAGGCCGCAAAGTAGATCGTCTCGAAGATGTCGCGG-TTCAGTGCGCGC 103561 Query 116206 GCCTCGTCGGAATCAAACGCGAGACGGCA-CAAAATAAATACATCCGCGAGACCTTGGAC 116264 ||||| || || |||| | || ||| | || || | ||||| || || ||||| Sbjct 103560 GCCTCCGGCGAGTCGAACGGGT-ACCGCATCTGGATGAAGGCGTCCGCAAGGCCCTGGAC 103502 Query 116265 ACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATA 116321 |||| || | || | |||| ||| || || | | ||| | || ||| || || Sbjct 103501 GCCGATTCCGACGGGCCTGTGTCGCATGTTCGA--TCGGCGCGCT-TCGGGCACAGGGTA 103445 Query 116322 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 116381 | | || | ||||| ||| | || || || || ||| | || | || | || Sbjct 103444 ATAGTTGCCGTCGATCACCTTGTTCAGGTTCAGCGTTACAGTGTACGTCACGTCGTACAG 103385 Query 116382 CTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGC 116441 ||| | | | || || || | ||| |||| |||| | || ||||| ||||| Sbjct 103384 CTTATGGAAGTCGAACGTGG------CGTCAGTGACGAACTTGGACAGTGCGATCGACGC 103331 Query 116442 CAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATT 116501 ||| || || || | ||||| ||| |||||||| | |||||||| |||| || Sbjct 103330 CAGGTTGCAGACGGCCGTCTCGTCCGCCGACGTGTACTCGACGATTTCCGTGCACAGGTT 103271 Query 116502 TGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTA 116561 ||||| || || |||| |||||| || || ||||| |||| || || |||||||| Sbjct 103270 ACTGCTCTTGATCGTCCCCAGGTTCTTCTGGTTCGACTTGCTGTTGCAAGCGTCCTTGTA 103211 Query 116562 GAGCATATATGGCGTCCCCGTCTC 116585 | ||| || ||||||||||| || Sbjct 103210 CATCATGTAGGGCGTCCCCGTTTC 103187 Score = 131 bits (144), Expect = 2e-25 Identities = 243/354 (69%), Gaps = 7/354 (2%) Strand=Plus/Minus Query 116838 CAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC 116897 || ||||| || || | ||| |||||||||||||||||||||||||| |||| | || Sbjct 102879 CAGCTCCAGGAACTCGAAGATGTCCGCGTGCCACGGTTCCAGGTACACGGCGAACGCGCC 102820 Query 116898 CTTGCGA---CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCAT 116954 |||||| | || |||||| || || | || || || || ||||||||||| Sbjct 102819 CTTGCGTTTCCCGCCGCCCTGGTCGACGTAGCGGGCAGTGTCGGAGAACACGCGAAGCAT 102760 Query 116955 TGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTGTTGGCTCTG 117012 || | ||| || | || ||| || || || |||| || ||| | | |||| | Sbjct 102759 GGGGACGATGCCGTTCGACGTGCCGTTCGTACCACGAATGTAGGAGCC--GGTGGCGCGC 102702 Query 117013 ACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTG 117072 || | ||| | ||| | ||||| || || ||| |||| ||||| ||||| || Sbjct 102701 ACGTTGTGCACGTGGACGCCAATGCCGCCGGCCGACTTGGAGATGATGGCGCATTCGCGC 102642 Query 117073 AGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGAC 117132 || || ||||||| || ||||| ||||| ||| || | ||||||||| |||| Sbjct 102641 AGCGTGTCGTAGATGCCCTCGATGGAGTCGTTCTTGAGCGCCACCAGGAAGCAGGACGAC 102582 Query 117133 ATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 ||||| || || || || |||||||| | ||| || | |||||| ||||| Sbjct 102581 ATTTGCGGGACGGGCGTGCCGGCGTTGAACATGGTCGGGGACGCGTGCGTGAAC 102528 >seq35 Length=630556 Score = 111 bits (122), Expect = 2e-19 Identities = 174/249 (70%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 10600 GGTATTCTCTTCAACCACGAGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATC 10659 || || || ||||||||||| || |||||||||||| |||||||| |||||| Sbjct 186181 GGCATCCTGTTCAACCACGAAAGCCCGCGTCGTGGCCCGACGTTCGTGACCCGCAAGATC 186240 Query 10660 ACCGATGGTATCAAACAAATCGTGGCGGGTGAGAGGGAGTTCATTGAATTGGGGAACCTC 10719 || || || | |||| ||| || | ||| | | | | | |||||| || Sbjct 186241 ACGCGTGCCGTCGCTCGCATCGCGGCCGGCAAACAGGACTGCCTGTACCTCGGGAACATC 186300 Query 10720 AACGCCGAGAGGGACTGGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTC 10779 ||||| || | |||||||| |||||||||||||| || | ||||||||| | | | Sbjct 186301 GACGCCAAGCGTGACTGGGGGCACGCCAAGGACTACGTCGCTGCCATGTGGATGATGATG 186360 Query 10780 CAACAAGAAGAGGCGGACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAG 10839 || || || || |||| || || ||| ||||||| || ||||| ||| | ||| | || Sbjct 186361 CAGCAGGAGAAGCCGGATGACTACGTCATCGCGACCGGCGAGACGCACACGGTCCGCGAA 186420 Query 10840 TTCGTTGAG 10848 ||||| ||| Sbjct 186421 TTCGTCGAG 186429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613505934641400