Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq68 163 5e-35 seq101 102 1e-16 >seq68 Length=472887 Score = 163 bits (180), Expect = 5e-35 Identities = 337/492 (68%), Gaps = 7/492 (1%) Strand=Plus/Minus Query 203836 CGTCTTG-TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACA 203894 ||||||| || || ||||||| ||||||| ||||| |||| || ||| ||||||| Sbjct 104255 CGTCTTGGTCAACGGTGAACTTGATGGCGTCGACGGCGGGCCGAGATCGCAGGTAGTACA 104196 Query 203895 TGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGT 203954 |||| ||||| ||||| || ||| |||| | ||||| || | ||| |||| | || Sbjct 104195 TGCCCGTCTTGAGGCCTTTAGTCCAGGCGTAGAAATGCATCGACGTCAGCTTGCCAAAGT 104136 Query 203955 TGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCT 204013 | ||||| |||||| | ||| | || || ||||| ||| |||||||| ||||| Sbjct 104135 TAATGTCGGTCATGTGGACGTTGAACGATTGCGACTGGTCAATG-AAGGCGCCGCGATCG 104077 Query 204014 GCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTG 204073 |||||||| | || | | ||||||| |||||||| || |||||| ||| ||| || Sbjct 104076 GCGGCCATGTCAATCAGCGACTTCTGCTTGATCTCCCAAACGGTCTTGTACAGGTCCTTG 104017 Query 204074 GTGTGTTGAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCAT 204132 | || || | || | | || || || ||| ||||||| |||||||| || | Sbjct 104016 AGATCCTGCGGGA-TTCGGTCAATGTTCTGGACCGACCCGTTGTGTGCCATCAG-CTGGT 103959 Query 204133 -CCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGA 204191 | | || || |||||| |||| ||||||| ||| || |||||| ||||| Sbjct 103958 GGCGCAAGTCGTCGTCCCACAGGCCCCGGTTGATCAGGTCCACCAGCAGGTGCTTGTTGA 103899 Query 204192 TGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGA 204251 ||| || || || | |||||| | || | | | | |||| | ||| | || |||| Sbjct 103898 TGACGGTGAACTCACCAGCCAGCACACGTCTCGCGTAGATGTTGCTCGTGTACGGCTCGA 103839 Query 204252 ACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCA 204311 | ||||||||| || | ||||| ||| || |||||||| || || || |||| Sbjct 103838 AGCACTCGTTGTTCCCCAGGATCTGGCTGGTTGACGCTGTGGGCATCGGCGCGAGCAGCA 103779 Query 204312 GGGAGTTGCGCA 204323 || || |||| Sbjct 103778 ACGAATTCCGCA 103767 Score = 87.8 bits (96), Expect = 3e-12 Identities = 244/369 (66%), Gaps = 4/369 (1%) Strand=Plus/Minus Query 205237 CTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACGGCCA 205295 |||||||| ||||| || || | ||||| ||||||||||| || | ||||||| | Sbjct 102885 CTTTTTCAGCTCCAGG-AACTCGAAGATGTCCGCGTGCCACGGTTCCAGGTACACGGCGA 102827 Query 205296 TTGCG-CCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACT 205354 ||| ||| || | || || |||||||| || ||| | | || ||| || Sbjct 102826 ACGCGCCCTTGCGT-TTCCCGCCGCCCTGGTCGACGTAGCGGGCAGTGTCGGAGAACACG 102768 Query 205355 CGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCA 205414 || ||||| || || | ||||| | || |||||||| | ||| ||||| Sbjct 102767 CGAAGCATGGGGACGATGCCGTTCGACGTGCCGTTCGTACCACGAATGTAGGAGCCGGTG 102708 Query 205415 GCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCAC 205474 || | ||||||| | | ||||||| ||||| | |||||| ||| |||||| Sbjct 102707 GCGCGCACGTTGTGCACGTGGACGCCAATGCCGCCGGCCGACTTGGAGATGATGGCGCAT 102648 Query 205475 TCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCAC 205534 || |||| ||| ||||||||| ||||||| |||| | || | |||||| |||| Sbjct 102647 TCGCGCAGCGTGTCGTAGATGCCCTCGATGGAGTCGTTCTTGAGCGCCACCAGGAAGCAG 102588 Query 205535 GAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAAG 205594 || | || | | | | ||||| |||| ||| | || ||| ||||| |||| Sbjct 102587 GACGACATTTGCGGGACGGGCGTGCCGGCGTTGAACATGGTCGGGGACGCGTGCGTGAAC 102528 Query 205595 CGCTTCTCG 205603 | ||||||| Sbjct 102527 CACTTCTCG 102519 >seq101 Length=873781 Score = 102 bits (112), Expect = 1e-16 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 159650 TTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTC 159709 |||||||| ||||| |||||||||| | | || ||||| || |||| ||||| Sbjct 438977 TTCTCGAAGAAGTTCGTCTTGCCCTGAAGGCTGATCAGGTCCATCCACTCGAACGGGTTT 439036 Query 159710 TTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCG 159769 | || | ||| | ||||||| || || || |||||||||| ||| |||||||| ||| Sbjct 439037 TCGACTTTGTAGTGTTTCGGAAGGCCCAGCGCAGCCAGCAACCGGTCAGCCACAAACTCG 439096 Query 159770 ATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 ||||| || | ||||| | | | || || || | || ||| || ||||| || | Sbjct 439097 ATGTA-CTGCGACATCAGGAGAGAATTCATGCCAATGAGGTCAACTGGTAGCGCATCGCA 439155 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTC 159858 | || |||||||||||||| || ||||| Sbjct 439156 AACGAATTCCTTCTCAATCTCAACAGCTTC 439185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795153559992400