Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq1 147 5e-30 seq122 141 2e-28 seq112 136 9e-27 >seq1 Length=1189627 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| | ||||||||||| |||| ||||||||| || | || | ||||| Sbjct 523544 AGGACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCATCC 523603 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || |||||||| |||||||| ||||||||| ||| || || ||| Sbjct 523604 TCGAGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCC 523663 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| |||| |||| ||||| | || ||||| | |||||||||| Sbjct 523664 TGGATCTTGGCCTTGACGGTCTCGATCGTGTCGCCCGAGTCGACATCGAGCGTGATCGTC 523723 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| || || ||||| || || || Sbjct 523724 TTACCCGTCAGGGTCTTCACGAAGATCTG 523752 >seq122 Length=778307 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || ||||||||||| || |||||||| |||| ||||||||| || | || Sbjct 759227 CGAAGACGAAGAACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCGAGCGTG 759286 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || || ||||| |||||||||||||| || || ||| Sbjct 759287 CGCCCGTCCTCCAGCTGCTTCCCCGCAAAGATCAGACGCTGCTGGTCTGGCGGGATGCCT 759346 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| ||| || | |||| |||||| | || ||||||| Sbjct 759347 TCCTTGTCCTGAATCTTCGCCTTGACAGTCTCGATGGTGTCACCAGAATCGACATCCAGA 759406 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || ||||| || || || Sbjct 759407 GTGATGGTCTTCCCAGTGAGCGTCTTCACGAAGATCTG 759444 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||| || ||||| ||||||||||| || |||| ||||||||| || | || Sbjct 759458 CGAAGACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCAAGCGTG 759517 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||| || |||||||| ||||||||||| || ||||||||||| || ||| || Sbjct 759518 CGTCCATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGAATACCC 759577 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||||| |||| ||||| | || || || | | Sbjct 759578 TCCTTGTCCTGGATCTTGGCCTTCACGGTCTCGATCGTGTCACCGCTGTCGACGTCGAGC 759637 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| ||||| || || ||||| || || || Sbjct 759638 GTAATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTG 759675 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| ||||| || ||||||||||| |||| ||||||||| |||| || Sbjct 341091 CGAAGGCGAAGGACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTG 341150 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| || || ||||| |||||||| |||||||| ||| || Sbjct 341151 CGGCCGTCCTCCAGCTGCTTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCC 341210 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| |||| |||| ||||| | | | ||||| | Sbjct 341211 TCCTTGTCCTGGATCTTGGCCTTGACGGCCTCGATCGTGTCCGACGACGCCACATCGAGT 341270 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||||||||| || || || || || || || ||||| Sbjct 341271 GTGATCGTCTTGCCGGTAAGCGTCTTGACGAATATTTG 341308 Score = 86.0 bits (94), Expect = 1e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||||||||| |||||| | || |||||| | || | ||||| |||||| ||||| Sbjct 759552 CTGATCTTCGCCGGCAAGCAGCTCGAGGATGGACGCACGCTTGCCGACTACAACATCCAG 759493 Query 200995 AAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 201029 |||||||| ||||| ||||| || || | ||||| Sbjct 759492 AAAGAGTCGACTCTGCACCTGGTGCTGCGTCTTCG 759458 >seq112 Length=800634 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| || || || ||||||||||| |||| ||||||||| || | || Sbjct 314866 CGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTG 314925 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||||||||||||||||||| || |||||||| || || ||| || || Sbjct 314926 CGACCATCCTCCAGCTGCTTTCCGGCGAAAATCAGACGCTGTTGATCAGGAGGGATGCCC 314985 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| || || | |||| ||||| || || |||||||| Sbjct 314986 TCCTTGTCCTGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGACATCCAAT 315045 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || || || || || || || Sbjct 315046 GTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTG 315083 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| || || || ||||||||||| || | ||||||||| |||| || Sbjct 315097 CGCAGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAGCGTG 315156 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || ||||||||||| ||||| ||||| |||||||||||||| || || || Sbjct 315157 CGCCCGTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCC 315216 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| | |||| ||||| | || ||||||| | Sbjct 315217 TCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTGTCGCCGCTGTCCACATCCAGC 315276 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| ||||| || || ||||| || || || Sbjct 315277 GTAATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTG 315314 Score = 134 bits (148), Expect = 3e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| | ||| || ||||||||||| |||| |||||| || ||||| || Sbjct 314501 CGCAGACGCAGGACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTT 314560 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| |||| |||||| ||||||||||| |||||||| || || ||| || || Sbjct 314561 CGGCCATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGTTGATCAGGAGGGATACCC 314620 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| |||||| | |||| ||||| || || |||||||| Sbjct 314621 TCCTTATCCTGAATCTTGGCCTTCACCGTCTCGATCGTGTCGCCTGAGTCGACATCCAAT 314680 Query 199589 GTGATCGTCTTACC 199602 ||||| ||||| || Sbjct 314681 GTGATGGTCTTCCC 314694 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| || || || ||||||||||| |||| ||||||||| || | || Sbjct 314039 CGCAGACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTG 314098 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| ||||||||||| ||||||||||||||||| || || Sbjct 314099 CGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCC 314158 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| |||||| | |||| || || | || || |||| Sbjct 314159 TCCTTATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATCGCCGCTGTCCACGTCCAGT 314218 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| ||||| || || || || || || || Sbjct 314219 GTAATCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTG 314256 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || || || | ||||||||||| |||| ||||||||| || | || Sbjct 314270 CGCAGACGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTG 314329 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| ||||||||||| ||||||||||| |||||||| |||||||| ||| || Sbjct 314330 CGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATACCC 314389 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| |||||| | ||||| ||||| | || || || | | Sbjct 314390 TCCTTGTCCTGAATCTTGGCCTTCACAGTTTCGATCGTGTCACCCGAGTCGACGTCAAGC 314449 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || || || || || || Sbjct 314450 GTAATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTG 314487 Score = 104 bits (114), Expect = 6e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 ||||| ||||||||||| ||||||||||| ||||||||||||||||| ||| || ||| Sbjct 314698 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCT 314757 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 ||||||||||| |||||| | ||||| ||||| | || || || | ||| Sbjct 314758 TTGTCCTGAATCTTGGCCTTCACCGTTTCGATTGTGTCACCCGAGTCGACGTCAAGCGTA 314817 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || || || || || || || || || Sbjct 314818 ATGGTCTTTCCTGTCAGCGTCTTGACGAAGATCTG 314852 Score = 91.5 bits (100), Expect = 3e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||||||||| ||||||||||| ||||| | || ||||||||||||||| ||||| Sbjct 314595 CTGATCTTCGCCGGCAAGCAGTTGGAGGATGGCCGAACCTTGGCCGATTACAACATCCAG 314536 Query 200995 AAAGAGTCTACTCTTCAC 201012 || ||||| || |||||| Sbjct 314535 AAGGAGTCGACACTTCAC 314518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178919107686055