Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq122 159 4e-34 seq112 159 4e-34 seq1 156 5e-33 >seq122 Length=778307 Score = 159 bits (176), Expect = 4e-34 Identities = 167/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||||| |||| || ||| || ||||| |||||||||| || ||||| | Sbjct 759463 ACGCAGCACCAGGTGCAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGTCC 759522 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || |||||||||||||||||||| |||| |||||||||||||| ||| | | |||||| Sbjct 759523 ATCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGCTGGTCGGGCGGAATACCCTCCTT 759582 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT-TCCACATCCACCGTGA 46556 |||| |||||| ||| | ||| | | |||||| | || | || || || | ||| | Sbjct 759583 GTCCTGGATCTTGGCCTTCACGGTCTCGATCGTGTCAC-CGCTGTCGACGTCGAGCGTAA 759641 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||||||||| || || || ||||| ||||| Sbjct 759642 TGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 759678 Score = 134 bits (148), Expect = 2e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | || |||||| |||| || |||||||| || || || Sbjct 759256 CTCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAA 759315 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||| | ||| | || ||||||||| |||||| ||||| || Sbjct 759316 GATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGAATCTTCGCCTTGACAGT 759375 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| | || || ||||||| |||||||| || || || ||||| || || Sbjct 759376 CTCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGTCTTCCCAGTGAGCGTCTTCAC 759435 Query 46582 AAAGATTTGCAT 46593 ||||| ||||| Sbjct 759436 GAAGATCTGCAT 759447 >seq112 Length=800634 Score = 159 bits (176), Expect = 4e-34 Identities = 167/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| || ||||||| ||| |||||| ||||| |||||||||| || ||||| | Sbjct 314044 ACGCAGGACGAGATGCAGTGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACC 314103 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||||||||| |||| ||||||||||| | ||| | || |||||| Sbjct 314104 ATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTT 314163 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT-TCCACATCCACCGTGA 46556 ||| |||||| ||| | |||| | | ||| |||| || | ||||| |||| || | Sbjct 314164 ATCCTGGATCTTGGCCTTCACCGTCTCGATCGTATCGC-CGCTGTCCACGTCCAGTGTAA 314222 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || |||||||||||||| || || ||||| ||||| Sbjct 314223 TCGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 314259 Score = 159 bits (176), Expect = 4e-34 Identities = 167/217 (77%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| || ||||||| || |||||| || || |||||||| | || |||||| | Sbjct 315102 ACGCAGGACGAGATGCAGCGTCGACTCCTTCTGAATGTTGTAGTCCGCCAGCGTGCGCCC 315161 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || |||||||||||||| || |||| ||||||||||| | ||| | || |||||| Sbjct 315162 GTCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTT 315221 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT-TCCACATCCACCGTGA 46556 ||| |||||| ||| | |||| | | |||||||| || | |||||||||| ||| | Sbjct 315222 ATCCTGGATCTTGGCCTTCACCGTCTCGATCGTGTCGC-CGCTGTCCACATCCAGCGTAA 315280 Query 46557 TGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || ||||||||||| || || || ||||| ||||| Sbjct 315281 TCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 315317 Score = 138 bits (152), Expect = 1e-27 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| || |||||||| || |||||| ||||| |||||||||| || ||||| | Sbjct 314275 ACGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACC 314334 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || ||||||||||||||||| |||| ||||| ||||| | || | | |||||| Sbjct 314335 ATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATACCCTCCTT 314394 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| ||||| ||| | || | | |||||| | ||| || || || | ||| || Sbjct 314395 GTCCTGAATCTTGGCCTTCACAGTTTCGATCGTGTCACCCGAGTCGACGTCAAGCGTAAT 314454 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || |||||||| || || ||||| ||||| Sbjct 314455 GGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCAT 314490 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||||||||||||||| |||| ||||||||||| | || | | ||| ||| Sbjct 314701 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGAATACCCTCTTTG 314760 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||| ||| | ||| | | ||||| | ||| || || || | ||| ||| Sbjct 314761 TCCTGAATCTTGGCCTTCACCGTTTCGATTGTGTCACCCGAGTCGACGTCAAGCGTAATG 314820 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || |||||||| || || ||||| ||||| Sbjct 314821 GTCTTTCCTGTCAGCGTCTTGACGAAGATCTGCAT 314855 Score = 93.3 bits (102), Expect = 5e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||| || | ||| |||||| ||||| ||||| |||| | || || | Sbjct 314506 ACGCAGGACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCC 314565 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | ||||||||||||||| |||| ||||| || || | || | | |||||| Sbjct 314566 ATCCTCCAACTGCTTGCCGGCGAAGATCAGACGCTGTTGATCAGGAGGGATACCCTCCTT 314625 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 ||| ||||| ||| | |||| | | |||||||| || || ||||||| ||||| Sbjct 314626 ATCCTGAATCTTGGCCTTCACCGTCTCGATCGTGTCGCCTGAGTCGACATCCAATGTGAT 314685 Query 46558 GGTTTTGCC 46566 ||| || || Sbjct 314686 GGTCTTCCC 314694 >seq1 Length=1189627 Score = 156 bits (172), Expect = 5e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || || ||||| || |||||| ||||| |||||||||| || |||||| | || ||| Sbjct 523547 ACGAGGTGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCATCCTCG 523606 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||| ||||| |||| ||||| ||||| | || | | |||||||||| | Sbjct 523607 AGCTGCTTGCCAGCGAAGATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGG 523666 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| ||| | | |||||||| ||| || ||||| | |||||| || || Sbjct 523667 ATCTTGGCCTTGACGGTCTCGATCGTGTCGCCCGAGTCGACATCGAGCGTGATCGTCTTA 523726 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||||| || || || ||||| ||||| Sbjct 523727 CCCGTCAGGGTCTTCACGAAGATCTGCAT 523755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565237234195800