Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq112 149 6e-31 seq122 131 2e-25 seq1 125 7e-24 seq83 102 8e-17 seq101 89.7 5e-13 >seq112 Length=800634 Score = 149 bits (164), Expect = 6e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| |||||||| |||||||| | || ||||| | | Sbjct 315086 ATGCAGATCTTCGTCAAGACGCTTACGGGCAAGACCATCACATTGGATGTCGACTCAGGC 315027 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | |||| || || | ||||| ||||| || || | || ||| Sbjct 315026 GACACGATCGAGACGGTCAAAGCCAAGATTCAGGACAAGGAGGGCATCCCTCCTGATCAA 314967 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| || || |||||||| || | ||||||||| |||||||||| Sbjct 314966 CAGCGTCTGATTTTCGCCGGAAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAAC 314907 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||||||||||| | || |||||| || | || || Sbjct 314906 ATCCAGAAGGAGTCGACGCTGCATCTCGTCCTGCGTCTGCGTGGTGG 314860 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || || || ||||| || | |||||||| | Sbjct 314490 ATGCAGATCTTCGTCAAGACGCTGACAGGGAAGACCATTACGCTTGACGTCGACTCGGGT 314431 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | |||| | || | || || | ||||| ||||| |||||| | |||||| Sbjct 314430 GACACGATCGAAACTGTGAAGGCCAAGATTCAGGACAAGGAGGGTATTCCCCCGGACCAA 314371 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| |||||||| || | ||||||||| |||||||||| Sbjct 314370 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAAC 314311 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||||| ||||| | || |||||| || | || || Sbjct 314310 ATCCAGAAGGAGTCGACGTTGCATCTCGTTCTGCGTCTGCGTGGTGG 314264 Score = 132 bits (146), Expect = 5e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| |||||||| || || || | ||||| || | | Sbjct 314259 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACGATTACACTGGACGTGGACAGCGGC 314200 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACCA 38362 || | | | ||| | || | || |||| || || ||||| || ||||||| |||| Sbjct 314199 GATACGATCGAGACGGTGAAGGCCAAGATCCAGGATAAGGAGGGCAT-CCCGCCGGACCA 314141 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| |||||||| || | ||||||||| ||||||||| Sbjct 314140 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACCCTCGCCGACTACAA 314081 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCCGC 38474 |||||| ||||| |||| |||||| | || |||||| || | || || ||| Sbjct 314080 CATCCAGAAGGAGTCGACACTGCATCTCGTCCTGCGTCTGCGTGGTGGTCGC 314029 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| || || || | || || || | | Sbjct 315317 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACGATTACGCTGGATGTGGACAGCGGC 315258 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | ||| | || | || |||| || || ||||| || |||||| ||||| Sbjct 315257 GACACGATCGAGACGGTGAAGGCCAAGATCCAGGATAAGGAGGGCAT-CCCGCCTGACCA 315199 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | || ||||| |||||||| |||| |||||| || |||||||| Sbjct 315198 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGACGGGCGCACGCTGGCGGACTACAA 315139 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| || ||||| ||||||||||| | || |||||| || | ||||| Sbjct 315138 CATTCAGAAGGAGTCGACGCTGCATCTCGTCCTGCGTCTGCGTGGCGG 315091 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || || || ||||| || | |||||||| | Sbjct 314855 ATGCAGATCTTCGTCAAGACGCTGACAGGAAAGACCATTACGCTTGACGTCGACTCGGGT 314796 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||||| | || | || || | ||||||||||| |||||| | ||||| Sbjct 314795 GACACAATCGAAACGGTGAAGGCCAAGATTCAGGACAAAGAGGGTATTCCCCCGGACCAG 314736 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGA 38398 ||||| || || | ||| ||||| |||||||| || Sbjct 314735 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGA 314701 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCAAACGCTTAAAGAAAAA 38330 || || |||||||| | || ||||| | ||||| | | ||| | || | || Sbjct 314694 GGGAAGACCATCACATTGGATGTCGACTCAGGCGACACGATCGAGACGGTGAAGGCCAAG 314635 Query 38331 ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAG 38390 || | || || ||||| || || | || |||||||| || || | ||| ||||| ||| Sbjct 314634 ATTCAGGATAAGGAGGGTATCCCTCCTGATCAACAGCGTCTGATCTTCGCCGGCAAGCAG 314575 Query 38391 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTG 38450 |||| || | || ||| | ||| ||||||||||| ||||| |||| || || ||| Sbjct 314574 TTGGAGGATGGCCGAACCTTGGCCGATTACAACATCCAGAAGGAGTCGACACTTCACTTG 314515 Query 38451 GTGCTGCGTTTGAGAGGCGG 38470 || |||||| || | || || Sbjct 314514 GTCCTGCGTCTGCGTGGTGG 314495 >seq122 Length=778307 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| ||||| || |||||||||| | Sbjct 759678 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATTACGCTCGACGTCGACAGCGGT 759619 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | || | || | || |||| ||||| ||||| ||||| ||||||| Sbjct 759618 GACACGATCGAGACCGTGAAGGCCAAGATCCAGGACAAGGAGGGTATTCCGCCCGACCAG 759559 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || || | ||||| || |||||||||| Sbjct 759558 CAGCGCCTGATCTTCGCCGGCAAGCAGCTCGAGGATGGACGCACGCTTGCCGACTACAAC 759499 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || || |||| ||||| ||||||||||| | | ||||| Sbjct 759498 ATCCAGAAAGAGTCGACTCTGCACCTGGTGCTGCGTCTTCGTGGCGG 759452 Score = 123 bits (136), Expect = 2e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||| || ||||| || ||||| || ||||| |||| || | | | | Sbjct 341311 ATGCAAATATTCGTCAAGACGCTTACCGGCAAGACGATCACACTCGATGTGGCGTCGTCG 341252 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || |||| ||||| ||||| ||||| | |||||| Sbjct 341251 GACACGATCGAGGCCGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAA 341192 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || || || |||||||| |||| ||||| || |||||||||| Sbjct 341191 CAGCGTCTGATCTTTGCTGGTAAGCAGCTGGAGGACGGCCGCACGCTGGCCGACTACAAC 341132 Query 38424 ATCCAAAAGGAAGCGACGCTGCA 38446 ||||| ||||| |||||||||| Sbjct 341131 ATCCAGAAGGAGTCGACGCTGCA 341109 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || |||||||| || || |||||||| | || ||||| | Sbjct 759447 ATGCAGATCTTCGTGAAGACGCTCACTGGGAAGACCATCACTCTGGATGTCGATTCTGGT 759388 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | || | || | || || | ||||| || || || |||||| ||||| Sbjct 759387 GACACCATCGAGACTGTCAAGGCGAAGATTCAGGACAAGGAAGGCAT-CCCGCCAGACCA 759329 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||||| || |||||||| |||| |||||| ||| |||||||| Sbjct 759328 GCAGCGTCTGATCTTTGCGGGGAAGCAGCTGGAGGACGGGCGCACGCTCGCGGACTACAA 759269 Query 38423 CATCCAAAAGGA 38434 |||||| ||||| Sbjct 759268 CATCCAGAAGGA 759257 >seq1 Length=1189627 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||| || || ||||| |||| ||||| | | Sbjct 523755 ATGCAGATCTTCGTGAAGACCCTGACGGGTAAGACGATCACGCTCGATGTCGACTCGGGC 523696 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | || | || | || |||| ||||| ||||| ||||| | |||||| Sbjct 523695 GACACGATCGAGACCGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCTCCGGACCAA 523636 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || || | |||||| ||| |||||||||| Sbjct 523635 CAGCGTCTGATCTTCGCTGGCAAGCAGCTCGAGGATGGGCGCACGCTCGCCGACTACAAC 523576 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||||| |||| | || || ||| || | || || Sbjct 523575 ATCCAGAAGGAGTCGACGTTGCACCTCGTCCTCCGTCTGCGTGGTGG 523529 >seq83 Length=380421 Score = 102 bits (112), Expect = 8e-17 Identities = 123/160 (77%), Gaps = 12/160 (8%) Strand=Plus/Minus Query 107665 TGAGGTTGCCCAGGTCGCCGACGTGCCTGATCTCGGCGTCGG---GCGCGCCGTG-GTCG 107720 ||| |||||| |||||||||||||||| ||||| ||||| ||||||| || ||| Sbjct 22499 TGATGTTGCCAAGGTCGCCGACGTGCCG---CTCGGTGTCGGCGGGCGCGCCATGCGTCT 22443 Query 107721 CGCTTCGT-CGGGTTGAAATGCTCGCCGGCCGACGTGCAGCCGTTGC-TCGCGTCGCCGA 107778 || || ||| ||| | ||| |||||| ||| | ||| || |||| ||| ||||||| Sbjct 22442 TGC--CGAACGGATTGTAGTGCCCGCCGGTCGATGCGCACCC-TTGCGTCGTGTCGCCGT 22386 Query 107779 ACTCGTGCACGTGGAAGCCGTGCAGGCCGCGCGGCAGGCC 107818 ||| || ||||||||||||||| ||||| ||| ||| || Sbjct 22385 GCTCATGGACGTGGAAGCCGTGCTGGCCGGGCGTCAGCCC 22346 >seq101 Length=873781 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/190 (72%), Gaps = 4/190 (2%) Strand=Plus/Plus Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCG- 133364 || ||||| || |||||||| |||| |||||||||||| | ||||| ||||| ||||| Sbjct 439811 CTTGCGGCAAAGAAGGCCAGGACGTTCTTGATGAAATGTCTCTCGTCATCGTT-AAGCGC 439869 Query 133365 CTCCCAGTCGCGCGTGTCCTTG-GACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCT 133423 | |||| || | ||| |||| |||||||| | ||| || ||||||| ||||| || Sbjct 439870 CGCCCAATC-CTTGTGATCTTGCGACAGGTCAATCTCTTCCGCGGTCCAGAACGATGCGA 439928 Query 133424 CGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGC 133483 | ||| |||||||| ||| | | |||| | ||||| || | || |||||| Sbjct 439929 CATGTTTCTTGTACATCTCCCAAACGGATGAATGCTCGATGGGGAAGAGGACGAACCGGT 439988 Query 133484 GGGGGTTTTC 133493 ||||| || Sbjct 439989 TCGGGTTCTC 439998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171768393600