Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq68 138 1e-27 >seq68 Length=472887 Score = 138 bits (152), Expect = 1e-27 Identities = 287/424 (68%), Gaps = 4/424 (1%) Strand=Plus/Minus Query 106442 TCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTA 106501 ||| |||| |||| | || ||||| || |||| ||||| || |||||||| ||| Sbjct 103362 TCAGTGACGAACTTGGACAGTGCGATCGACGCCAGGTTGCAGACGGCCGTCTCGTCCGCC 103303 Query 106502 TCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTT 106561 |||||||| | ||||| || |||| ||| ||||| |||||||||| ||||| Sbjct 103302 GACGTGTACTCGACGATTTCCGTGCACAGGTTACTGCTCTTGATCGTCCCCAGGTTCTTC 103243 Query 106562 TGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTC 106621 ||||| ||| ||||||| || |||||||| | |||||||||||||||||| || | Sbjct 103242 TGGTTCGACTTGCTGTTGCAAGCGTCCTTGTACATCATGTAGGGCGTCCCCGTTTCGACC 103183 Query 106622 TGTGACTTGAGAATTGCCTTCCACACAT-CGGCG-GCTGGTACAATGGCGTTGGCCCGTC 106679 || | || || || || ||||| | | ||| ||| | | ||||| ||| | Sbjct 103182 TGGGCCTCCAGGATCGCGAACCACAGGTCCTGCGCCCTGATCGTCTTACGTTG--CCGGC 103125 Query 106680 CCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGAC 106739 |||| ||| || | | | || || | ||||| || ||| |||| | |||| Sbjct 103124 CCTCGTTCTCATAGCGTTCGAACAGCGCAGCGAACTCGTCGCCCCAGACGTCCGCCAGAC 103065 Query 106740 CTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGA 106799 | || |||| || || ||||| | ||||| || | | ||| || |||| ||||| Sbjct 103064 CGGGCGCCTCGTTCGGGCAGAACAACGACCAGTGGGCGTCGGCCTGCACACGCTGCATGA 103005 Query 106800 AAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTT 106859 | || || |||||||| ||| |||| || || | | || ||||||| | || | Sbjct 103004 ACAGATCGGGAATCCAAAGGCCGTAAAACAGGTCACGAGCACGTTCCTCTTCCTTGCCGT 102945 Query 106860 GGTT 106863 |||| Sbjct 102944 GGTT 102941 Score = 86.0 bits (94), Expect = 7e-12 Identities = 282/435 (65%), Gaps = 5/435 (1%) Strand=Plus/Minus Query 106873 CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTT 106932 ||| |||||||| | ||| ||||||||||| || || || || || |||| | ||||| Sbjct 102876 CTCCAGGAACTCGAAGATGTCCGCGTGCCACGGTTCCAGGTACACGGCGAACGCGCCCTT 102817 Query 106933 TCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGG 106989 || | || | || | || ||||| || ||| || || ||||||||||| || Sbjct 102816 GCGTTTCCCGCCGCCCTGGTCGACGTAGCGGGCAGTGTCGGAGAACACGCGAAGCATGGG 102757 Query 106990 AATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATC 107049 | || || | || || || || || ||||| || |||| | ||| | Sbjct 102756 GACGATGCCGTTCGACGTGCCGTTCGTACCACGAATGTAGGAGCCGGTGGCGCGCACGTT 102697 Query 107050 ATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGT 107109 || | ||| | ||||| || || ||| |||| ||||| || || || || || Sbjct 102696 GTGCACGTGGACGCCAATGCCGCCGGCCGACTTGGAGATGATGGCGCATTCGCGCAGCGT 102637 Query 107110 TCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTG 107169 | ||||| || | ||| ||||| | |||| || | |||||||| ||||| || Sbjct 102636 GTCGTAGATGCCCTCGATGGAGTCGTTCTTGAGCGCCACCAGGAAGCAGGACGACATTTG 102577 Query 107170 CGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGGG 107228 ||| || || || || ||||| | ||| || | ||||| ||||| || | | || Sbjct 102576 CGGGACGGGCGTGCCGGCGTTGAACATGGTCGGGGACGCGTGCGTGAAC-CACTTCTCGG 102518 Query 107229 ACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCA 107288 |||| || ||| || | | | | | | || || | ||||||||||| ||| | Sbjct 102517 ACATGAGGTTGTACGTTTGGATGGCCGCCGCGATATCCGACTTGTGGATGCCGACGGCGA 102458 Query 107289 CACGCATAAACATGT 107303 | ||||| | ||||| Sbjct 102457 CGCGCATCAGCATGT 102443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589979583164600