Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq122 120 2e-22 seq112 105 4e-18 seq1 93.3 3e-14 >seq122 Length=778307 Score = 120 bits (132), Expect = 2e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| | ||| | ||| |||| || ||||| || ||||| || Sbjct 759488 TCTTTCTGGATGTTGTAGTCGGCAAGCGTGCGTCCATCCTCGAGCTGCTTGCCGGCGAAG 759547 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| ||||| || |||| Sbjct 759548 ATCAGGCGCTGCTGGTCGGGCGGAATACCCTCCTTGTCCTGGATCTTGGCCTTCACGGTC 759607 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| |||||| || || |||| || ||||| || ||||| || |||||||| Sbjct 759608 TCGATCGTGTCACCGCTGTCGACGTCGAGCGTAATGGTCTTGCCCGTCAGGGTCTTCACG 759667 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 759668 AAGATCTGCAT 759678 Score = 114 bits (126), Expect = 8e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||||| || | || | || |||||||| || || ||||| Sbjct 759257 TCCTTCTGGATGTTGTAGTCCGCGAGCGTGCGCCCGTCCTCCAGCTGCTTCCCCGCAAAG 759316 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||||||| |||| | || |||||||| ||||||| ||||| | Sbjct 759317 ATCAGACGCTGCTGGTCTGGCGGGATGCCTTCCTTGTCCTGAATCTTCGCCTTGACAGTC 759376 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||||| | || ||||| | || ||||| || || ||||| |||||||| Sbjct 759377 TCGATGGTGTCACCAGAATCGACATCCAGAGTGATGGTCTTCCCAGTGAGCGTCTTCACG 759436 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 759437 AAGATCTGCAT 759447 >seq112 Length=800634 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || |||| |||||||| |||||||| || Sbjct 314896 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTTCCGGCGAAA 314955 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || || || | || | ||||||||||| |||||| |||||| | Sbjct 314956 ATCAGACGCTGTTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTTGGCTTTGACCGTC 315015 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || || | || ||||| | || ||||| || ||||| || ||||| || Sbjct 315016 TCGATCGTGTCGCCTGAGTCGACATCCAATGTGATGGTCTTGCCCGTAAGCGTCTTGACG 315075 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 315076 AAGATCTGCAT 315086 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||||||||| ||||||| || | || | || |||||||| || |||||||| Sbjct 315127 TCCTTCTGAATGTTGTAGTCCGCCAGCGTGCGCCCGTCCTCCAGCTGCTTGCCGGCAAAG 315186 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | |||||||| || ||||| || || | Sbjct 315187 ATCAGACGCTGCTGGTCAGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTC 315246 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || ||| || ||||| | || || || || ||||| || |||||||| Sbjct 315247 TCGATCGTGTCGCCGCTGTCCACATCCAGCGTAATCGTCTTGCCCGTCAGGGTCTTCACG 315306 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 315307 AAGATCTGCAT 315317 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || |||| |||||||| || ||||| || Sbjct 314300 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAG 314359 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || ||||| | || | ||||||||||| |||||| || || | | Sbjct 314360 ATCAGACGCTGTTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTGGCCTTCACAGTT 314419 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| ||||| | || || || | || ||||| || || || || ||||| || Sbjct 314420 TCGATCGTGTCACCCGAGTCGACGTCAAGCGTAATGGTCTTCCCTGTCAGCGTCTTGACG 314479 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 314480 AAGATCTGCAT 314490 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || |||| |||||||| || ||||| || Sbjct 314069 TCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAG 314128 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | |||||||| || ||||| || || | Sbjct 314129 ATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACCGTC 314188 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || ||| || || || | || || || || ||||| || ||||| || Sbjct 314189 TCGATCGTATCGCCGCTGTCCACGTCCAGTGTAATCGTCTTGCCCGTCAGCGTCTTGACG 314248 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 314249 AAGATCTGCAT 314259 >seq1 Length=1189627 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | || | || |||| || ||||| || || || || Sbjct 523565 TCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCCATCCTCGAGCTGCTTGCCAGCGAAG 523624 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || || ||||| | || | ||||||||||| ||||| ||||||| Sbjct 523625 ATCAGACGCTGTTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACGGTC 523684 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || || | || ||||||| || || || || ||||| || |||||||| Sbjct 523685 TCGATCGTGTCGCCCGAGTCGACATCGAGCGTGATCGTCTTACCCGTCAGGGTCTTCACG 523744 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 523745 AAGATCTGCAT 523755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324632947182120