Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq144 87.8 1e-12 >seq144 Length=755806 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 30160 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCC 30219 |||| || |||||||||||||||||||| ||||||||||| |||||||| ||| Sbjct 82045 TACTTCGCACCGAAATGCCTCCACTGGAAACCGTACACCGGCCCCAGGTCACCCGGACGA 81986 Query 30220 CTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTT 30279 | | | ||| || | |||||| || || | || || ||| | ||||| ||| Sbjct 81985 CGATCGTGGAACCCAAGCCTGTCCAGGAATTCACGCGACCCATTGCCATCCCAAATCCGG 81926 Query 30280 ACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCC 30339 | || || || |||| | | | || |||| | || |||| |||||| || || ||| Sbjct 81925 ATGCCTTTGGCGCTGAGCACCTCGCCGTCTGTGCAACCGCTGATGAACCAAAGGAGTTCC 81866 Query 30340 TCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAACTGTCCCTT 30395 || | ||| | ||| || |||| ||||| || || | || ||||| || || Sbjct 81865 TCGGCAACGCCGCGCCAGAACACCCGTTTGGTTGTCAGCAACGGGAACTGCCCATT 81810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408616778295545