Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq122 105 5e-18 seq112 95.1 1e-14 >seq122 Length=778307 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || || ||||| ||||| | || | | | || |||| ||| Sbjct 341109 TGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGC 341168 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||| |||| ||||||||| || ||||||||||| || || || || || || Sbjct 341169 TTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTG 341228 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || || || | ||||| |||| |||| || || |||| ||| |||||||| Sbjct 341229 GCCTTGACGGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTGCCGGTA 341288 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || ||||| ||||| Sbjct 341289 AGCGTCTTGACGAATATTTGCAT 341311 >seq112 Length=800634 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| || || || || || || ||||||||||| | |||| | |||| ||| Sbjct 314513 ACCAAGTGAAGTGTCGACTCCTTCTGGATGTTGTAATCGGCCAAGGTTCGGCCATCCTCC 314572 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||||| || || || |||| |||||||||||| || || || || || ||||| ||| Sbjct 314573 AACTGCTTGCCGGCGAAGATCAGACGCTGTTGATCAGGAGGGATACCCTCCTTATCCTGA 314632 Query 101381 ATTTT 101385 || || Sbjct 314633 ATCTT 314637 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||| || || || || || || || ||||| ||||||| || | |||| |||| || Sbjct 314883 ATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCATCCTCCAGCTG 314942 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || || || |||| |||||||||||| || || ||||| || || || ||||| || Sbjct 314943 CTTTCCGGCGAAAATCAGACGCTGTTGATCAGGAGGGATGCCCTCCTTGTCCTGAATCTT 315002 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| || | || | ||||| | || || || | |||| || ||||| || Sbjct 315003 GGCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGACATCCAATGTGATGGTCTTGCCCGT 315062 Query 101446 TAAAGTTTTTACAAATATCTGCATGGT 101472 | || || || || |||||||| || Sbjct 315063 AAGCGTCTTGACGAAGATCTGCATCGT 315089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396277603108905