Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq112 93.3 3e-14 seq122 86.0 5e-12 >seq112 Length=800634 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| || | ||| | ||| ||| || || || ||||| || | || | ||| Sbjct 314273 AGACGCAGAACGAGATGCAACGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGA 314332 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| |||||||| |||| ||||| |||||| Sbjct 314333 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGTTGGTCCGGGGGAATACCCTCC 314392 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || |||| | | | || || || || || | |||| Sbjct 314393 TTGTCCTGAATCTTGGCCTTCACAGTTTCGATCGTGTCACCCGAGTCGACGTCAAGCGTA 314452 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || || || || |||| || || || || ||||||||||| Sbjct 314453 ATGGTCTTCCCTGTCAGCGTCTTGACGAAGATCTGCATCGT 314493 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/225 (68%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| || | ||| ||||| ||| || || || ||||| || | || | ||| Sbjct 314869 AGACGCAGGACGAGATGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGA 314928 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||||||||| | || | ||||||| Sbjct 314929 CCATCCTCCAGCTGCTTTCCGGCGAAAATCAGACGCTGTTGATCAGGAGGGATGCCCTCC 314988 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCC----TCCACCTCCAC 48724 ||||| |||||| ||| || | | || || |||| || || |||| Sbjct 314989 TTGTCCTGAATCTTGGCTTTGACCGTCTC----GATCGTGTCGCCTGAGTCGACATCCAA 315044 Query 48725 CGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGT 48769 || || || || ||||| | || || || || ||||||||||| Sbjct 315045 TGTGATGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTGCATCGT 315089 >seq122 Length=778307 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || ||||| ||| || || || ||||| || | || | || |||| |||| |||| Sbjct 341109 TGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCCAGCTGC 341168 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 ||||| ||||| ||||| |||||||| |||| |||| |||||||||||| ||||| Sbjct 341169 TTACCAGCAAAGATCAGACGCTGTTGGTCCGGCGGAATGCCCTCCTTGTCCTGGATCTTG 341228 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | | | || |||| | |||| || | || ||||| || || || Sbjct 341229 GCCTTGACGGCCTCGATCGTGTCCGACGACGCCACATCGAGTGTGATCGTCTTGCCGGTA 341288 Query 48744 AAAGTTTTTACAAAAATCTGCATCG 48768 | || || || || || ||||||| Sbjct 341289 AGCGTCTTGACGAATATTTGCATCG 341313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380936833958295