Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq68 269 5e-67 >seq68 Length=472887 Score = 269 bits (298), Expect = 5e-67 Identities = 702/1052 (67%), Gaps = 34/1052 (3%) Strand=Plus/Minus Query 212711 CTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCTCTCTGGGAGAGCTC 212770 |||||| ||||| | | | | || ||||||||||| || | |||| || ||| Sbjct 104101 CTGGTCAATGAAGGCGCCGCGATCGGCGGCCATGTCAATCAGCGACTTCTGCTTGATCTC 104042 Query 212771 CCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGGATGTTCTGCACAGA 212830 ||| ||||||||| | | || ||||| |||| |||| | | |||||||| || || Sbjct 104041 CCAAACGGTCTTGTACAGGTCCTTGAGATCCTGCGGGATTCGGTCAATGTTCTGGACCGA 103982 Query 212831 CCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAG 212890 ||| ||||| ||||||| |||||| ||| |||| ||| ||||||| | | ||| Sbjct 103981 CCCGTTGTGTGCCATCAGCTGGTGGCGCAAGTCGTCGTCCCACAGGCCCCGGTTGATCAG 103922 Query 212891 GCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTA 212950 | | | |||||| ||||| | ||| ||||| | ||||| | ||| ||| Sbjct 103921 GTCCACCAGCAGGTGCTTGTTGATGACGGTGAACTCACCAGCCAGCACACGTCTCGCGTA 103862 Query 212951 AAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTG-- 213008 | ||| ||||| ||||||| || ||||||||||||||| ||||| || | | || Sbjct 103861 GATGTTGCTCGTGTACGGCTCGAAGCACTCGTTGTTCCCCAGGATCTG-GCTG-GTTGAC 103804 Query 213009 GCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGC 213068 ||||||||||| || || | ||| | |||| || || ||| | |||| | | Sbjct 103803 GCTGTGGGCATCGGCGCGAGCAGCAACGAATTCCGCATGCCATGCCGGGCGATATCGGCC 103744 Query 213069 CGAAGCTCTGCCCAGTCCCATCTGCCA-GACAGGTCCTCGTCCTTCACGTTCCACATGTC 213127 ||| | |||||||||||| || | ||| | ||| || ||||||||||| Sbjct 103743 TTCAGCGCGTCCCAGTCCCATC-GCGACGACGG---------CTTTACATTCCACATGTC 103694 Query 213128 AAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTC 213187 ||||| | ||||| | | | | |||||||| || | || ||||||||| | || Sbjct 103693 GAACTGGAGAATGCCCTGGGACGCCGGGCTGCCAGGGAACGACTCGTAGGGGCCGTCCTT 103634 Query 213188 CTTGGCCAGCTCGCAGGACGC-CTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCC 213246 |||||| || ||| || |||| ||| || ||||||| || || || || || | Sbjct 103633 AACGGCCAGATCCTTGGAGGCAGTGCA-GGCCGCAAAGTAGATCGTCTCGAAGATGTCGC 103575 Query 213247 TGTTGAGCTTCTTG-GCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCA 213305 ||| || | | | ||||| || || ||| || | ||| | ||| | || Sbjct 103574 GGTTCAG-TGCGCGCGCCTCCGGCGAGTCGAACGGGTACCGCATCTGGATGAAGGCGTCC 103516 Query 213306 GCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCAC-TC 213364 || || |||||||| ||||| |||| ||| ||||||| || ||| || | || || | || Sbjct 103515 GCAAGGCCCTGGACGCCGATTCCGACGGGCCTGTGTCGCATGTTCGA-TCGGCGCGCTTC 103457 Query 213365 CTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGT 213424 || |||||| |||||| |||||| | |||||| ||||| | || | | || Sbjct 103456 GGGCACAGGGTAATAGTTGCCGTCGATCACCTTGTTCAGGTTCAGCGTTACAGTGTACGT 103397 Query 213425 GACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAG 213484 || | | ||| | | | | || |||| | |||| || |||| | ||| Sbjct 103396 CACGTCGTACAGCTTATGGAAGTCGA--ACGTGG----CGTCAGTGACGAACTTGGACAG 103343 Query 213485 GGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGTGTACTCCATGATCTC 213544 ||||| ||||||||||| |||||| ||| | | |||||||| | ||| || Sbjct 103342 TGCGATCGACGCCAGGTTGCAGACGGCCGTCTCGTCCGCCGACGTGTACTCGACGATTTC 103283 Query 213545 GGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGC 213604 ||||||||||| |||| ||| || |||||||||| ||||| ||||| |||| Sbjct 103282 CGTGCACAGGTTACTGCTCTTGATCGTCCCCAGGTTCTTCTGGTTCGACTTGCTGTTGCA 103223 Query 213605 AGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCT 213664 || |||||||| | ||||||||| | ||| || || | ||||| | |||| ||| | Sbjct 103222 AGCGTCCTTGTACATCATGTAGGGCGTCCCCGTTTCGACCTGGGCCTCCAGGATCGCGAA 103163 Query 213665 CCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAG-CCTCGTACTGT 213722 ||| |||| |||| ||| ||| || || || |||| | | | ||| || || Sbjct 103162 CCACAGGT-CCTGCGCCCTGA----TCGTCTTACGTTGCCGGCCCTCGTTCTCATAGCGT 103108 Query 213723 TCGTAGAGCTCGTTGAATTCGTGGCCCCAGAC 213754 ||| | ||| | ||| |||| ||||||||| Sbjct 103107 TCGAACAGCGCAGCGAACTCGTCGCCCCAGAC 103076 Score = 127 bits (140), Expect = 4e-24 Identities = 341/515 (66%), Gaps = 11/515 (2%) Strand=Plus/Minus Query 213896 CAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCC 213955 ||| || || || || |||||||||||||||||||| |||| ||| | ||| || ||||| Sbjct 102879 CAGCTCCAGGAACTCGAAGATGTCCGCGTGCCACGGTTCCAGGTACACGGCGAACGCGCC 102820 Query 213956 C---GGCCTCTTGCCGCCCTGGTCCAC-CAGCCTGGCCACCAT-GTTGAAGATGCGCAGG 214010 | | || |||||||||||| || ||| || || | | ||| | ||| || Sbjct 102819 CTTGCGTTTCCCGCCGCCCTGGTCGACGTAGC--GGGCAGTGTCGGAGAACACGCGAAGC 102762 Query 214011 ACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTC 214070 | ||| || | ||||| ||| ||||| || || || || ||||||| ||| | | Sbjct 102761 ATGGGGACGATGCCGTTCGACGTGCCGTTCGTACCACGAATGTAGGAGCCGGTGGCGCGC 102702 Query 214071 AGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTC 214130 | |||| || | || || ||||| ||||| |||||||||| |||||||| | | Sbjct 102701 ACGTTGTGCACGTGGACGCCAATGCCGCCGGCCGACTTGGAGATGATGGCGCATTCGCGC 102642 Query 214131 ACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAG 214190 | || || |||||| | ||| ||| | |||| || || ||||||| ||| Sbjct 102641 AGCGTGTCGTAGATGCCCTCGATGGAGTCGTTCTTGAGCGCCACCAGGAAGCAGGACGAC 102582 Query 214191 AGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATGGATCATAAACTTG 214250 | || || || || ||| | |||||| | || ||| || || | | |||| Sbjct 102581 ATTTGCGGGACGGGCGTGCCGGCGTTGAACATGGTCGGGGACGCGTGCGTGAACCACTTC 102522 Query 214251 TTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTTGTGGATCTGTAGA 214310 | || | ||| |||| || | | | | | | ||| || ||||||||| | Sbjct 102521 TCGGACATGAGGTTGTACGTTTGGATGGCCGCCGCGATATCCGACTTGTGGATGCCGACG 102462 Query 214311 GCGCACCTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTT--TGGGGCCCTTGAGCA 214368 ||| | ||||||||||||||| || | ||| | | ||| | | |||| |||| Sbjct 102461 GCGACGCGCATCAGCATGTGCTGTGGGCGCTC--GGCGATCTTGCCGTCGACCTTCAGCA 102404 Query 214369 GGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAG 214403 |||| || || ||||| |||||||| || || ||| Sbjct 102403 GGTACGACCGTTCCAGGGTCTTGAAGCCGAAATAG 102369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931530878713600