Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq68 132 9e-26 >seq68 Length=472887 Score = 132 bits (146), Expect = 9e-26 Identities = 260/377 (69%), Gaps = 22/377 (6%) Strand=Plus/Minus Query 221504 AAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGCCTGTGTCTCCTGTTGGAAGCG 221563 ||| |||| || || ||||| || ||||| |||| ||||||||||| | |||| | | || Sbjct 103524 AAGGCGTCCGCAAGGCCCTGGACGCCGATTCCGACGGGCCTGTGTCGCATGTTCG-ATCG 103466 Query 221564 GC-CGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAGATTGTTGAGGTTCAGAGTGAT 221622 || |||||| ||||| || ||| ||||| ||||||||| ||||| |||||||| || | Sbjct 103465 GCGCGCTTCGGGCACAGGGTAATAGTTGCCGTCGATCACCTTGTTCAGGTTCAGCGTTA- 103407 Query 221623 GACTTTA-ACCACCTCGGTCAGCTTCTGGTGATTGAACACCAACTCGCCGCCGTCGTGGA 221681 | | || ||| ||| |||||| || ||| | ||| | || | ||| Sbjct 103406 CAGTGTACGTCACGTCGTACAGCTT------ATGGAAGTCGAACGTGGCGTC--AGTGAC 103355 Query 221682 GGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTTACACACGGCCACCTCGTCCT 221741 | || || | ||| | | || |||||||| || |||||| ||||||| Sbjct 103354 GAACTTGGAC-AGTGCGAT-----CGAC----GCCAGGTTGCAGACGGCCGTCTCGTCCG 103305 Query 221742 TGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCACTTGATGGTCCCCAGGTGAT 221801 || |||| | ||| || || || ||||| |||| |||||| |||||||||| | Sbjct 103304 CCGACGTGTACTCGACGATTTCCGTGCACAGGTTACTGCTCTTGATCGTCCCCAGGTTCT 103245 Query 221802 TGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCA 221861 | || || ||||||| ||| |||||||||||| | ||| |||| || || || | Sbjct 103244 TCTGGTTCGACTTGCTGTTGCAAGCGTCCTTGTACATCATGTAGGGCGTCCCCGTTTCGA 103185 Query 221862 GCTGAGCCACCAGAATC 221878 ||| ||| |||| ||| Sbjct 103184 CCTGGGCCTCCAGGATC 103168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928842884257600