Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq112 86.0 4e-11 >seq112 Length=800634 Score = 86.0 bits (94), Expect = 4e-11 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || || |||||||| || ||||| ||||| |||||||||||||| || || ||||| Sbjct 314931 ATCCTCCAGCTGCTTTCCGGCGAAAATCAGACGCTGTTGATCAGGAGGGATGCCCTCCTT 314990 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATC-AGTGTGTGAAGTTTCAAGGGTAA 480735 ||| |||||||| |||||| | || || || || || || | | ||| || | Sbjct 314991 GTCCTGAATCTTGGCTTTGACCGTCTCGATCGTGTCGCCTGAGTCGACATCCAA-TGTGA 315049 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || || ||||| ||||| || || Sbjct 315050 TGGTCTTGCCCGTAAGCGTCTTGACGAAGATCTG 315083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268172122349420