Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodiophora_20brassicae_20[genbank_20GCA_5F001049375.1_202015-06- 30] 165 sequences; 24,050,826 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq68 104 7e-17 >seq68 Length=472887 Score = 104 bits (114), Expect = 7e-17 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 155589 ATAGACGCCAGATTACATACCGCAGTCTCCTT-GTCGTCGCTGTATTCTACAATCTCACA 155647 || |||||||| || || || || ||||| | | || || |||| || || || || Sbjct 103338 ATCGACGCCAGGTTGCAGACGGCCGTCTCGTCCGCCGACG-TGTACTCGACGATTTCCGT 103280 Query 155648 GCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGC 155707 |||||||||| |||||||| || || | ||||||||||| || || ||||| ||||| Sbjct 103279 GCACAGGTTACTGCTCTTGATCGTCCCCAGGTTCTTCTGGTTCGACTTGCTGTTGCAAGC 103220 Query 155708 ATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCA 155767 |||||||| | ||||| || || || || || | ||| || ||||| ||| | ||| Sbjct 103219 GTCCTTGTACATCATGTAGGGCGTCCCCGTTTCGACCTGGGCCTCCAGGATCGCGAACCA 103160 Query 155768 GAGGTC 155773 ||||| Sbjct 103159 CAGGTC 103154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471814488485605